I'm trying to download over 30,000 files from a FTP server, and after some googling using asynchronous IO seemed a good idea. However, the code below failed to download any files and returns a Timeout Error. I'd really appreciate any help! Thanks!
class pdb:
def __init__(self):
self.ids = []
self.dl_id = []
self.err_id = []
async def download_file(self, session, url):
try:
with async_timeout.timeout(10):
async with session.get(url) as remotefile:
if remotefile.status == 200:
data = await remotefile.read()
return {"error": "", "data": data}
else:
return {"error": remotefile.status, "data": ""}
except Exception as e:
return {"error": e, "data": ""}
async def unzip(self, session, work_queue):
while not work_queue.empty():
queue_url = await work_queue.get()
print(queue_url)
data = await self.download_file(session, queue_url)
id = queue_url[-11:-7]
ID = id.upper()
if not data["error"]:
saved_pdb = os.path.join("./pdb", ID, f'{ID}.pdb')
if ID not in self.dl_id:
self.dl_id.append(ID)
with open(f"{id}.ent.gz", 'wb') as f:
f.write(data["data"].read())
with gzip.open(f"{id}.ent.gz", "rb") as inFile, open(saved_pdb, "wb") as outFile:
shutil.copyfileobj(inFile, outFile)
os.remove(f"{id}.ent.gz")
else:
self.err_id.append(ID)
def download_queue(self, urls):
loop = asyncio.get_event_loop()
q = asyncio.Queue(loop=loop)
[q.put_nowait(url) for url in urls]
con = aiohttp.TCPConnector(limit=10)
with aiohttp.ClientSession(loop=loop, connector=con) as session:
tasks = [asyncio.ensure_future(self.unzip(session, q)) for _ in range(len(urls))]
loop.run_until_complete(asyncio.gather(*tasks))
loop.close()
Error message if I remove the try
part:
Traceback (most recent call last):
File "test.py", line 111, in
x.download_queue(urls)
File "test.py", line 99, in download_queue
loop.run_until_complete(asyncio.gather(*tasks))
File "/home/yz/miniconda3/lib/python3.6/asyncio/base_events.py", line 467, in run_until_complete
return future.result()
File "test.py", line 73, in unzip
data = await self.download_file(session, queue_url)
File "test.py", line 65, in download_file
return {"error": remotefile.status, "data": ""}
File "/home/yz/miniconda3/lib/python3.6/site- packages/async_timeout/init.py", line 46, in exit
raise asyncio.TimeoutError from None
concurrent.futures._base.TimeoutError
tasks = [asyncio.ensure_future(self.unzip(session, q)) for _ in range(len(urls))]
loop.run_until_complete(asyncio.gather(*tasks))
Here you start process of downloading concurrently for all of your urls. It means that you start to count timeout for all of them also. Once it's a big number such as 30,000 it can't be physically done within 10 seconds due to networks/ram/cpu capacity.
To avoid this situation you should guarantee limit of coroutines started simultaneously. Usually synchronization primitives like asyncio.Semaphore can be used to achieve this.
It'll look like this:
sem = asyncio.Semaphore(10)
# ...
async def download_file(self, session, url):
try:
async with sem: # Don't start next download until 10 other currently running
with async_timeout.timeout(10):
As an alternative to @MikhailGerasimov's semaphore approach, you might consider using the aiostream.stream.map operator:
from aiostream import stream, pipe
async def main(urls):
async with aiohttp.ClientSession() as session:
ws = stream.repeat(session)
xs = stream.zip(ws, stream.iterate(urls))
ys = stream.starmap(xs, fetch, ordered=False, task_limit=10)
zs = stream.map(ys, process)
await zs
Here's an equivalent implementation using pipes:
async def main3(urls):
async with aiohttp.ClientSession() as session:
await (stream.repeat(session)
| pipe.zip(stream.iterate(urls))
| pipe.starmap(fetch, ordered=False, task_limit=10)
| pipe.map(process))
You can test it with the following coroutines:
async def fetch(session, url):
await asyncio.sleep(random.random())
return url
async def process(data):
print(data)
See more aiostream examples in this demonstration and the documentation.
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