ProGuard optimization also remove #wait() calls

Question

When Proguard optimize my application, it seams that all calls to Object#wait() are being removed.

So that each Thread which should passively wait (until notification) is now actively waiting (100% CPU usage).

When the optimizing is shutdown with -dontoptimize everything is OK.

Has I need the optimization for removing some method with -assumenosideeffects, I am searching for what's wrong.
Is it possible to preserve all calls to Object#wait() to be optimized (removed)?

Is there any other solution?

EDIT 1: For example this code:

@Override
public void run() {
    isRunning = true;
    try {
        while (isRunning) {
            if (parent.isActivate) {
                parent.updateDriveButtons();
                synchronized (this) {
                    wait(1000);
                }
            }
            else {
                synchronized (this) {
                    // Wait for that the page is activated.
                    Utils.wait(this);
                }
            }
        }
    }
    catch (Throwable e) {
        e.printStackTrace();
    }
    finally {
        isRunning = false;
    }
}

is being replaced by this code (after decompiling the optimized code): wait() has been removed and only the synchronize is visible with monitorenter; ... monitorexit;

 public final void run()
  {
    this.isRunning = true;
    try {
      while (this.isRunning) {
        if (this.parent.isShowing()) {
          ...
          monitorenter;
          monitorexit; continue;
        }

        monitorenter;

        monitorexit;
      }return;
    } catch (Throwable localThrowable) {
      Object Ljava/lang/Object;;
      return;
    } finally {
      this.isRunning = false; } throw localObject1;
  }

Answer 1

You appear to be specifying -assumenosideeffects options that also match Object#wait(). ProGuard then happily removes those calls for you. You probably shouldn't add -assumenosideeffects options beyond the ones that are documented in the ProGuard manual.