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Plot 3D plane (true regression surface)

Tags:

plot

r

3d

rgl

I'm trying to simulate some data (x1 and x2 - my explanatory variables), calculate y using a specified function + random noise and plot the resulting observations AND the true regression surface. Here's what I have so far:

   set.seed(1)
   library(rgl)

   # Simulate some data 

   x1 <- runif(50)
   x2 <- runif(50)
   y <- sin(x1)*x2+x1*x2 + rnorm(50, sd=0.3)
   # 3D scatterplot of observations 
   plot3d(x1,x2,y, type="p", col="red", xlab="X1", ylab="X2", zlab="Y", site=5, lwd=15)

Now I'm not sure how I can add the "true" regression plane. I'm basically looking for something like curve() where I can plug in my (true) model formula.

Thanks!

like image 429
user2249626 Avatar asked Aug 09 '13 13:08

user2249626


Video Answer


2 Answers

If you wanted a plane, you could use planes3d.

Since your model is not linear, it is not a plane: you can use surface3d instead.

my_surface <- function(f, n=10, ...) { 
  ranges <- rgl:::.getRanges()
  x <- seq(ranges$xlim[1], ranges$xlim[2], length=n)
  y <- seq(ranges$ylim[1], ranges$ylim[2], length=n)
  z <- outer(x,y,f)
  surface3d(x, y, z, ...)
}
library(rgl)
f <- function(x1, x2)
  sin(x1) * x2 + x1 * x2
n <- 200
x1 <- 4*runif(n)
x2 <- 4*runif(n)
y <- f(x1, x2) + rnorm(n, sd=0.3)
plot3d(x1,x2,y, type="p", col="red", xlab="X1", ylab="X2", zlab="Y", site=5, lwd=15)
my_surface(f, alpha=.2 )

rgl.snapshot

like image 76
Vincent Zoonekynd Avatar answered Oct 24 '22 10:10

Vincent Zoonekynd


Apologies: ( I didn't read the question very carefllly and now see that I rushed into estimation when you wanted to plot the Truth.)

Here's an approach to estimation followed by surface plotting using loess:

mod2 <- loess(y~x1+x2)
grd<- data.frame(x1=seq(range(x1)[1],range(x1)[2],len=20), 
                 x2=seq(range(x2)[1],range(x2)[2],len=20))
grd$pred <- predict(mod2, newdata=grd)
grd <- grd[order(grd$x1,grd$x2),]
x1 <- unique(grd$x1)
x2 <- unique(grd$x2)   # shouldn't have used y
surface3d(x1, x2, z=matrix(grd$pred,length(x1),length(x2)) )

Points and loess fit

like image 32
IRTFM Avatar answered Oct 24 '22 10:10

IRTFM