I would like to pack an array of shape (..., n * (n - 1) / 2)
into the lower triangular part of a tensor with shape (..., n, n)
where ...
denotes an arbitrary shape. In numpy, I would implement it as
import numpy as np
# Create the array to store data in
arbitrary_shape = (10, 11, 12)
n = 5
target = np.zeros(arbitrary_shape + (n, n))
# Create the source array
source = np.random.normal(0, 1, arbitrary_shape + (n * (n - 1) / 2,))
# Create indices and set values
u, v = np.tril_indices(n, -1)
target[..., u, v] = source
# Check that everything went ok
print target[0, 0, 0]
So far, I've been able to achieve something similar in tensorflow using a combination of transpose
, reshape
and scatter_update
but it feels clumsy.
import tensorflow as tf
# Create the source array
source = np.random.normal(0, 1, (n * (n - 1) / 2,) + arbitrary_shape)
sess = tf.InteractiveSession()
# Create a flattened representation
target = tf.Variable(np.zeros((n * n,) + arbitrary_shape))
# Assign the values
target = tf.scatter_update(target, u * n + v, source)
# Reorder the axes and reshape into a square matrix along the last dimension
target = tf.transpose(target, (1, 2, 3, 0))
target = tf.reshape(target, arbitrary_shape + (n, n))
# Initialise variables and check results
sess.run(tf.initialize_all_variables())
print target.eval()[0, 0, 0]
sess.close()
Is there a better way to achieve this?
I realise this is a bit late, but I've been attempting to load a lower triangular matrix, and I got it working using sparse_to_dense:
import tensorflow as tf
import numpy as np
session = tf.InteractiveSession()
n = 4 # Number of dimensions of matrix
# Get pairs of indices of positions
indices = list(zip(*np.tril_indices(n)))
indices = tf.constant([list(i) for i in indices], dtype=tf.int64)
# Test values to load into matrix
test = tf.constant(np.random.normal(0, 1, int(n*(n+1)/2)), dtype=tf.float64)
# Can pass in list of values and indices to tf.sparse_to_dense
# and it will return a dense matrix
dense = tf.sparse_to_dense(sparse_indices=indices, output_shape=[n, n], \
sparse_values=test, default_value=0, \
validate_indices=True)
sess.close()
You can do this with fill_lower_triangular
:
import numpy as np
import tensorflow as tf
from tensorflow.python.ops.distributions.util import fill_lower_triangular
n = 4
coeffs = tf.constant(np.random.normal(0, 1, int(n*(n+1)/2)), dtype=tf.float64)
lower_diag = fill_lower_triangular(coeffs)
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