Move running merge of git to beyond compare

Question

I made certain changes in my local branch. I didn't commit. I just indexed all changes and moved them to stash. Now I did a

git pull

After git pull I did

git stash apply

Now there are some conflicts. In eclipse I am able to see the conflicts in normal git format

<<<< Updated Upstream
ksldjflsdk
sdlkfjdslk
sdlkfjsdlk
===========
sdlkfjdslk
dslkfjdslkfj
dsklfjsdlkjf
>>>>> Stashed Changes

Now there are some files with hell lot of conflicts. It is very difficult for me to look up and down and merge. Is there a way I can move current merge process to beyond compare.

I am on git version 1.8.3 and Beyond Compare 3.2.3