Who knows how to turn on load local infile settings in the latest MySQL on Ubuntu? I edited the /etc/mysql/my.cnf
file and added
local-infile=1
And in the Perl code
dbConnectString=dbi:mysql:orthomcl:mysqllocalinfile=1
but still get
DBD::mysql::st execute failed: The used command is not allowed with this MySQL version...
It is used by an application called OrthoMCL
I tried configuring my.cnf
file:
sudo vim /etc/mysql/my.cnf
[mysqld]
user = mysql
pid-file = /var/run/mysqld/mysqld.pid
socket = /var/run/mysqld/mysqld.sock
port = 3306
basedir = /usr
datadir = /var/lib/mysql
tmpdir = /tmp
lc-messages-dir = /usr/share/mysql
skip-external-locking
local-infile = 1
[mysql]
#no-auto-rehash # faster start of mysql but no tab completition
local-infile = 1
Then a restart of the mysql server:
sudo service mysql restart
mysql stop/waiting
mysql start/running, process 9563
But then I still get:
DBD::mysql::st execute failed: The used command is not allowed with this MySQL version at ../Apps/orthomclSoftware-v2.0.3/bin/orthomclLoadBlast line 39, <F> line 12.
The used command is not allowed with this MySQL version at ../Apps/orthomclSoftware-v2.0.3/bin/orthomclLoadBlast line 39, <F> line 12.`
Line 39 is:
$stmt->execute() or die DBI::errstr;
which executes the lines above:
my $sql = "
LOAD DATA
LOCAL INFILE \"$blastFile\"
REPLACE INTO TABLE $sst
FIELDS TERMINATED BY '\\t'
";
my $stmt = $dbh->prepare($sql) or die DBI::errstr;
To disable or enable it explicitly, use the --local-infile=0 or --local-infile[=1] option. For the mysqlimport client, local data loading is not used by default. To disable or enable it explicitly, use the --local=0 or --local[=1] option.
The LOAD DATA INFILE statement reads rows from a text file into a table at a very high speed. If the LOCAL keyword is specified, the file is read from the client host. If LOCAL is not specified, the file must be located on the server. ( LOCAL is available in MySQL 3.22.
mysql> LOAD DATA LOCAL INFILE '/path/pet. txt' INTO TABLE pet; If you created the file on Windows with an editor that uses \r\n as a line terminator, you should use this statement instead: mysql> LOAD DATA LOCAL INFILE '/path/pet.
dbConnectString=dbi:mysql:orthomcl:mysql_local_infile=1:localhost:3306
I added also in mysql.cnf under
[client]
loose-local-infile=1
worked for me
If you love us? You can donate to us via Paypal or buy me a coffee so we can maintain and grow! Thank you!
Donate Us With