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I am an old-school MySQL user and have always preferred JOIN over sub-query. But nowadays everyone uses sub-query, and I hate it; I don't know why.
I lack the theoretical knowledge to judge for myself if there is any difference. Is a sub-query as good as a JOIN and therefore is there nothing to worry about?
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The advantage of a join includes that it executes faster. The retrieval time of the query using joins almost always will be faster than that of a subquery. By using joins, you can maximize the calculation burden on the database i.e., instead of multiple queries using one join query.
Subqueries and JOIN s can both be used in a complex query to select data from multiple tables, but they do so in different ways. Sometimes you have a choice of either, but there are cases in which a subquery is the only real option.
Sub-queries are the logically correct way to solve problems of the form, "Get facts from A, conditional on facts from B". In such instances, it makes more logical sense to stick B in a sub-query than to do a join. It is also safer, in a practical sense, since you don't have to be cautious about getting duplicated facts from A due to multiple matches against B.
Practically speaking, however, the answer usually comes down to performance. Some optimisers suck lemons when given a join vs a sub-query, and some suck lemons the other way, and this is optimiser-specific, DBMS-version-specific and query-specific.
Historically, explicit joins usually win, hence the established wisdom that joins are better, but optimisers are getting better all the time, and so I prefer to write queries first in a logically coherent way, and then restructure if performance constraints warrant this.
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