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New posts in snakemake

How to perform simple string operations in snakemake output

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How can I use a for loop to programmatically generate snakemake rules?

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Would it make sense to use Snakemake and Dask together?

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Snakemake - Wildcards in input files cannot be determined from output files

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snakemake: how to deal with variable number of output from a rule

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snakemake randomly identifying outputs as incomplete

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fastqc using Snakemake

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using conda environments in simple snakemake workflows

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Snakemake: how to realize a mechanism to copy input/output files to/from tmp folder and apply rule there

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Problem while creating environment from yaml file - iphop

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A way to iterate over one rule by changing an index in the filename using wildcards (in snakemake)

python wildcard bioinformatics snakemake

'expand' won't do what I want. How do I generate a custom list of inputs to a rule in Snakemake?

python snakemake

Conditional execution of one rule or another depending on the arguments given to a snakemake pipeline

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lambda function in snakemake output

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How to set binding memory limits in snakemake

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Handling SIGPIPE error in snakemake

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awk command fails in snakemake --use-singularity

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Building a workflow with dynamic input without using deprecated dynamic API

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snakemake: is there a way to specify an output directory for each rule?

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Using STAR shared memory module in Snakemake for sequential alignment tasks

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