First of all, I don't need a textual comparison so Beyond Compare doesn't do what I need.
I'm looking for a util that can report on the differences between two files, at the byte level. Bare minimum is the need to see the percentage change in the file, or a report on affected bytes/sectors.
Is there anything available to save me the trouble of doing this myself?
I found VBinDiff. I haven't used it, but it probably does what you want.
I guess it depends on what exactly is contained in the file, but here's a quick one:
hexdump file1 > file1.tmp
hexdump file2 > file2.tmp
diff file1.tmp file2.tmp
Since 16 bytes are typically reported on each line, this won't technically give you a count of the bytes changed, but will give you a rough idea where in the file changes have occurred.
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