I am facing strange problem with eclipse [Ganymede]. Once I added some breakpoints in my code and now even after I delete all those breakpoints, it appears again when I start the eclipse.
So, regularly first thing what I have to do after starting the eclipse is manually delete all breakpoints to start working. Probably eclipse stores the information about these breakpoints in some file and, I think, if I will delete that file my problem might be resolved. Please let me know if you have some solution for this.
In the Query Editor window, right-click the breakpoint, and then click Delete Breakpoint. In the Breakpoints window, right-click the breakpoint, and then click Delete on the shortcut menu. In the Breakpoints window, select the breakpoint, and then press DELETE.
Directly to the left of the line where you want to remove the breakpoint, open the marker bar pop-up menu and select Toggle Breakpoint. The breakpoint is removed from the workbench. You can also double-click directly on the breakpoint icon to remove it.
You can fix this immediately by opening the Markers view and delete the Java Exception Breakpoints. However, to permanently remove this type of breakpoints, you have to go to the Java Debug options and uncheck the "Suspend excecution on uncaught exceptions" option.
Another solution
Eclipse -> Run -> Remove All Breakpoints - for removing all Breakpoints for all Time
Eclipse -> Run -> Skip All Breakpoints - for temporary remove breakpoints
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