In this C program  
#include <stdio.h>
#include <fcntl.h>
int main()
{
    int file = open("Result", O_CREAT|O_WRONLY, S_IRWXU);
    dup2(stdout, file);
    system("ls -l");
    return 0;
}
I'm trying to redirect the output of system() to a file, for that i have used dup2 but it is not working.
What's wrong with this code?
and, please tell me if there is any better way to do this?  (without using > at the terminal )
stdout is a FILE * pointer of the standard output stream. dup2 expects file descriptor, also you've messed up the parameters order.
Use
dup2(file, 1);
instead.
On the better-way-to-do-this part. This way is bad because you probably want to restore your standard output after this system call completes. You can do this in a variety of ways. You can dup it somewhere and then dup2 it back (and close the dupped one). I personally don't like writing own cat implementations as suggested in other answers. If the only thing you want is redirecting a single shell command with system to a file in the filesystem, then probably the most direct and simple way is to construct the shell command to do this like
system("ls -l > Result");
But you have to be careful if filename (Result) comes from user input as user can supply something like 'Result; rm -rf /*' as the filename.
Also, on the topic of security, you should consider specifying the full path to ls as suggested in the comments:
system("/bin/ls -l > Result");
                        The simple thing is to use > indeed:
#include <stdio.h>
int main()
{
    system("ls -l > /some/file");
    return 0;
}
An alternative is using popen(), something along the lines of
   #include <stdio.h>
   #include <stdlib.h>
   main()
   {
           char *cmd = "ls -l";
           char buf[BUFSIZ];
           FILE *ptr, *file;
           file = fopen("/some/file", "w");
           if (!file) abort();
           if ((ptr = popen(cmd, "r")) != NULL) {
                   while (fgets(buf, BUFSIZ, ptr) != NULL)
                           fprintf(file, "%s", buf);
                   pclose(ptr);
           }
           fclose(file);
           return 0;
   }
                        You should use the popen() library function and read chunks of data from the returned FILE * and write them to whatever output file you like.
Reference.
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