Menu
I am trying to install Rjags on Ubuntu, I have first installed this
sudo apt-get install JAGS
Then I have tried
R
install.packages("rjags")
I have the following error
> install.packages("rjags")
Installing package into ‘/home/louis/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 71719 100 71719 0 0 46062 0 0:00:01 0:00:01 --:--:-- 46032
* installing *source* package ‘rjags’ ...
** package ‘rjags’ successfully unpacked and MD5 sums checked
checking for pkg-config... /usr/bin/pkg-config
configure: Setting compile and link flags according to pkg-config
configure: Compile flags are -I/usr/include/JAGS
configure: Link flags are -ljags
checking for gcc... x86_64-conda_cos6-linux-gnu-cc
checking whether we are using the GNU C compiler... no
checking whether x86_64-conda_cos6-linux-gnu-cc accepts -g... no
checking for x86_64-conda_cos6-linux-gnu-cc option to accept ISO C89... unsupported
checking for jags_version in -ljags... no
configure: error: "cannot link to JAGS library in /usr/lib."
ERROR: configuration failed for package ‘rjags’
* removing ‘/home/charlie/R/x86_64-pc-linux-gnu-library/3.4/rjags’
The downloaded source packages are in
‘/tmp/Rtmp9yfeon/downloaded_packages’
Warning message:
In install.packages("rjags") :
installation of package ‘rjags’ had non-zero exit status
I don't know how to solve this issue, thanks for your help
Andrey Kolyadin, I have followed your instruction, after installing I got this
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages will be upgraded:
r-cran-rjags
1 upgraded, 0 newly installed, 0 to remove and 296 not upgraded.
Need to get 88,6 kB of archives.
After this operation, 1 024 B of additional disk space will be used.
Get:1 http://ppa.launchpad.net/marutter/rrutter/ubuntu xenial/main amd64 r-cran-rjags amd64 1:4.6-1cran4ubuntu1ppa1~ubuntu16.04.1~ppa1 [88,6 kB]
Fetched 88,6 kB in 1s (68,8 kB/s)
(Reading database ... 250343 files and directories currently installed.)
Preparing to unpack .../r-cran-rjags_1%3a4.6-1cran4ubuntu1ppa1~ubuntu16.04.1~ppa1_amd64.deb ...
Unpacking r-cran-rjags (1:4.6-1cran4ubuntu1ppa1~ubuntu16.04.1~ppa1) over (1:4-5-1) ...
Setting up r-cran-rjags (1:4.6-1cran4ubuntu1ppa1~ubuntu16.04.1~ppa1) ...
THen I have tried to call the library in R but it is not detected, unfortunately ...
797
1) In the RStudio menu bar at the top of the screen, select Tools → Install Packages, then type rjags under Packages or 2) In the R Studio console window, type install. packages("rjags"). 2) In the R Studio console window, use command setwd, for example setwd ("C:/Bayesian").
If you installed it from the ppa suggested by andrey, remove it with
sudo apt-add-repository --remove ppa:marutter/rrutter
(Then) update your data:
sudo apt update
and then install it from the default
sudo apt install r-cran-rjags
Test it in R.
R
In R:
>library(rjags)
# Loading required package: coda
# Linked to JAGS 4.2.0
# Loaded modules: basemod,bugs
(probably redundant, just for SEO^^:) Works also for Linux Mint
133
If you love us? You can donate to us via Paypal or buy me a coffee so we can maintain and grow! Thank you!
Donate Us With
