Other than that I don't know if I can reproduce it now that it's happened (I've been using this particular application for a week or two now without issue), assuming that I'm running my application in the VS debugger, how should I go about debugging a deadlock after it's happened? I thought I might be able to get at call stacks if I paused the program and hence see where the different threads were when it happened, but clicking pause just threw Visual Studio into a deadlock too till I killed my application.
Is there some way other than browsing through my source tree to find potential problems? Is there a way to get at the call stacks once the problem has occured to see where the problem is? Any other tools/tips/tricks that might help?
Deadlock frequency can sometimes be reduced by ensuring that all applications access their common data in the same order - meaning, for example, that they access (and therefore lock) rows in Table A, followed by Table B, followed by Table C, and so on.
There is one more method to detect Deadlock in Java, it can be done by running the program in CMD. All we need to do is collect thread dumps and then we have to command to collect, depending upon the operating system. If we are running Java 8 on windows, a command would be jcmd $PID Thread.
What you did was the correct way. If Visual Studio also deadlocks, that happens now and then. It's just bad luck, unless there's some other issue.
You don't have to run the application in the debugger in order to debug it. Run the application normally, and if the deadlock happens, you can attach VS later. Ctrl+Alt+P, select the process, choose debugger type and click attach. Using a different set of debugger types might reduce the risk of VS crashing (especially if you don't debug native code)
A deadlock involves 2 or more threads. You probably know the first one (probably your UI thread) since you noticed the deadlock in your application. Now you only need to find the other one. With knowledge of the architecture, it should be easy to find (e.g. what other threads use the same locks, interact with the UI etc)
If VS doesn't work at all, you can always use windbg. Download here: http://www.microsoft.com/whdc/devtools/debugging/default.mspx
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