I'm trying to mask a 3D array (RGB image) with numpy.
However, my current approach is reshaping the masked array (output below). I have tried to follow the approach described on the SciKit-Image crash course. Crash Course
I have looked in the Stackoverflow and a similar question has been asked, but with no accepted answer (similar question here)
What is the best way to accomplish masking like this?
Here is my attempt:
# create some random numbers to fill array
tmp = np.random.random((10, 10))
# create a 3D array to be masked
a = np.dstack((tmp, tmp, tmp))
# create a boolean mask of zeros
mask = np.zeros_like(a, bool)
# set a few values in the mask to true
mask[1:5,0,0] = 1
mask[1:5,0,1] = 1
# Try to mask the original array
masked_array = a[:,:,:][mask == 1]
# Check that masked array is still 3D for plotting with imshow
print(a.shape)
(10, 10, 3)
print(mask.shape)
(10, 10, 3)
print(masked_array.shape)
(8,)
# plot original array and masked array, for comparison
plt.imshow(a)
plt.imshow(masked_array)
plt.show()
NumPy broadcasting allows you to use a mask with a different shape than the image. E.g.,
import numpy as np
import matplotlib.pyplot as plt
# Construct a random 50x50 RGB image
image = np.random.random((50, 50, 3))
# Construct mask according to some condition;
# in this case, select all pixels with a red value > 0.3
mask = image[..., 0] > 0.3
# Set all masked pixels to zero
masked = image.copy()
masked[mask] = 0
# Display original and masked images side-by-side
f, (ax0, ax1) = plt.subplots(1, 2)
ax0.imshow(image)
ax1.imshow(masked)
plt.show()
After finding the following post on loss of dimensions HERE, I have found a solution using numpy.where:
masked_array = np.where(mask==1, a , 0)
This appears to work well.
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