Is it possible to completely remove an issue from the GitHub issue tracker?
If you are asking about deleting a project from GitHub, open your project, click the "Admin" tab (or browse directly to https://github.com/username/project_name/edit) and on the bottom of the page, click "Delete This Repository". It'll ask you to confirm this, and then it's gone.
How to delete Issues. If you have the right permissions, on the side of the Issue you'll see a link, Delete Issue.
No, the github API only allows you to open/close/reopen issues. Here's the Issues API docs.
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