properties files are Latin1 (ISO-8859-1) encoded by definition. ISO-8859-1 as its default encoding. You can change this under: Preferences > General > Content Types.
Window -> Preferences -> General -> Workspace : Text file encoding
Nanda's answer wasn't enough in my setup. What I needed to do is:
For eclipse Mars:
Change Workspace Encoding:
Check a file Encoding:
Preferences >> General >> Editors >> Text editors >> Spelling: Enconding
P.S.: Eclipse Indigo and Juno.
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