I want to apply t-tests on a bunch of variables. Below is some mock data
d <- data.frame(var1=rnorm(10),
var2=rnorm(10),
group=sample(c(0,1), 10, replace=TRUE))
# Is there a way to do this in some sort of loop?
with(d, t.test(var1~group))
with(d, t.test(var2~group))
# I tried this but the loop did not give a result!?
varnames <- c('var1', 'var2')
for (i in 1:2) {
eval(substitute(with(d, t.test(variable~group)),
list(variable=as.name(varnames[i]))))
}
Also, is it possible to extract the values from the t-test's result (e.g. two group means, p-value) so that the loop will produce a neat balance table across the variables? In other words, the end result I want is not a bunch of t-tests upon one another, but a table like this:
Varname mean1 mean2 p-value
Var1 1.1 1.2 0.989
Var2 1.2 1.3 0.912
You can use formula
and lapply
like this
set.seed(1)
d <- data.frame(var1 = rnorm(10),
var2 = rnorm(10),
group = sample(c(0, 1), 10, replace = TRUE))
varnames <- c("var1", "var2")
formulas <- paste(varnames, "group", sep = " ~ ")
res <- lapply(formulas, function(f) t.test(as.formula(f), data = d))
names(res) <- varnames
If you want to extract your table, you can proceed like this
t(sapply(res, function(x) c(x$estimate, pval = x$p.value)))
mean in group 0 mean in group 1 pval
var1 0.61288 0.012034 0.098055
var2 0.46382 0.195100 0.702365
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