Let me start by saying I have tried the methods outlined in Color coding error bars in a plotly scatter plot, but I have not been able to get them to work. From what I can tell there were changes in how coloraxes are treated in plotly version 4, which might be why this no longer solves the problem.
I want to make a simple scatterplot of two variables with error bars for each variable. I would like the color of the points and their error bars to follow a scale determined by a third variable. I have been unable to make the error bar colors match the markers. Below are a couple simple methods I tried and their results.
set.seed(1)
x.data <- rnorm(20, 0, 1)
y.data <- rnorm(20, 2, 1)
x.err <- runif(20, 0.2, 0.8)
y.err <- runif(20, 0.2, 0.8)
z.data <- runif(20, 1.7, 2.8)
p <- plot_ly() %>%
add_markers(x=x.data, y=y.data,
error_x=list(array=x.err, color=z.data),
error_y=list(array=y.err, color=z.data),
marker=list(color=z.data, colorscale='Viridis',
colorbar=list(title='Z', limits=range(z.data)))) %>%
layout(xaxis=list(title='X'), yaxis=list(title='Y'))
z.norm <- (z.data - min(z.data))/(max(z.data)-min(z.data))
mycramp<-colorRamp(c("darkblue","yellow"))
mycolors<-rgb(mycramp(z.norm), maxColorValue = 255)
p <- plot_ly() %>%
add_markers(x=x.data, y=y.data,
error_x=list(array=x.err, color=mycolors),
error_y=list(array=y.err, color=mycolors),
marker=list(color=mycolors,
colorbar=list(title='Z', limits=range(z.data)))) %>%
layout(xaxis=list(title='X'), yaxis=list(title='Y'))
color_continuous_scale (list of str) – Strings should define valid CSS-colors This list is used to build a continuous color scale when the column denoted by color contains numeric data. Various useful color scales are available in the plotly. express. colors submodules, specifically plotly. express.
errorbar() method is used to create a line plot with error bars. The two positional arguments supplied to ax. errorbar() are the lists or arrays of x, y data points. The two keyword arguments xerr= and yerr= define the error bar lengths in the x and y directions.
You can try use this example ad create own colorscale, or specify colorscale parameter inside your go. Heatmap() to any of those examples and choose one that you would like the most.
The documentation on r
plotly
can be a bit lacking. I think this is what you're looking for though. You want to use the name
argument. Both color
and name
have to be included. We have to define the name
argument's levels manually. We can set color
to factor as well but then we lose the color ramp. colors
let's us change the color palette using RColorBrewer
palettes.
plot_ly() %>%
add_markers(x = x.data,
y = y.data,
showlegend = F, # must hide legend here or it shows up twice
name = factor(z.data, levels = z.data, labels = z.data), # this is missing
color = z.data,
colors = "Set1",
error_x = list(array = x.err),
error_y = list(array = y.err))
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