Logo Questions Linux Laravel Mysql Ubuntu Git Menu
 

How do you add a numpy.array as a new column to a pyspark.SQL DataFrame?

Here is the code to create a pyspark.sql DataFrame

import numpy as np
import pandas as pd
from pyspark import SparkContext
from pyspark.sql import SQLContext
df = pd.DataFrame(np.array([[1,2,3],[4,5,6],[7,8,9],[10,11,12]]), columns=['a','b','c'])
sparkdf = sqlContext.createDataFrame(df, samplingRatio=0.1)

So that sparkdf looks like

a  b  c
1  2  3
4  5  6
7  8  9
10 11 12

Now I would like to add as a new column a numpy array (or even a list)

new_col = np.array([20,20,20,20])

But the standard way

sparkdf = sparkdf.withColumn('newcol', new_col)

fails. Probably an udf is the way to go, but I don't know how to create an udf that assigns one different value per DataFrame row, i.e. that iterates through new_col. I have looked at other pyspark and pyspark.sql but couldn't find a solution. Also I need to stay within pyspark.sql so not a scala solution. Thanks!

like image 605
rstreppa Avatar asked Aug 10 '15 22:08

rstreppa


1 Answers

Assuming that data frame is sorted to match order of values in an array you can zip RDDs and rebuild data frame as follows:

n = sparkdf.rdd.getNumPartitions()

# Parallelize and cast to plain integer (np.int64 won't work)
new_col = sc.parallelize(np.array([20,20,20,20]), n).map(int) 

def process(pair):
    return dict(pair[0].asDict().items() + [("new_col", pair[1])])

rdd = (sparkdf
    .rdd # Extract RDD
    .zip(new_col) # Zip with new col
    .map(process)) # Add new column

sqlContext.createDataFrame(rdd) # Rebuild data frame

You can also use joins:

new_col = sqlContext.createDataFrame(
    zip(range(1, 5), [20] * 4),
    ("rn", "new_col"))

sparkdf.registerTempTable("df")

sparkdf_indexed = sqlContext.sql(
    # Make sure we have specific order and add row number
    "SELECT row_number() OVER (ORDER BY a, b, c) AS rn, * FROM df")

(sparkdf_indexed
    .join(new_col, new_col.rn == sparkdf_indexed.rn)
    .drop(new_col.rn))

but window function component is not scalable and should be avoided with larger datasets.

Of course if all you need is a column of a single value you can simply use lit

import pyspark.sql.functions as f
sparkdf.withColumn("new_col", f.lit(20))

but I assume it is not the case.

like image 144
zero323 Avatar answered Oct 23 '22 03:10

zero323