How do I tell Matplotlib to create a second (new) plot, then later plot on the old one?

Question

If you find yourself doing things like this regularly it may be worth investigating the object-oriented interface to matplotlib. In your case:

import matplotlib.pyplot as plt
import numpy as np

x = np.arange(5)
y = np.exp(x)
fig1, ax1 = plt.subplots()
ax1.plot(x, y)
ax1.set_title("Axis 1 title")
ax1.set_xlabel("X-label for axis 1")

z = np.sin(x)
fig2, (ax2, ax3) = plt.subplots(nrows=2, ncols=1) # two axes on figure
ax2.plot(x, z)
ax3.plot(x, -z)

w = np.cos(x)
ax1.plot(x, w) # can continue plotting on the first axis

It is a little more verbose but it's much clearer and easier to keep track of, especially with several figures each with multiple subplots.

When you call figure, simply number the plot.

x = arange(5)
y = np.exp(5)
plt.figure(0)
plt.plot(x, y)

z = np.sin(x)
plt.figure(1)
plt.plot(x, z)

w = np.cos(x)
plt.figure(0) # Here's the part I need
plt.plot(x, w)

Edit: Note that you can number the plots however you want (here, starting from 0) but if you don't provide figure with a number at all when you create a new one, the automatic numbering will start at 1 ("Matlab Style" according to the docs).

However, numbering starts at 1, so:

x = arange(5)
y = np.exp(5)
plt.figure(1)
plt.plot(x, y)

z = np.sin(x)
plt.figure(2)
plt.plot(x, z)

w = np.cos(x)
plt.figure(1) # Here's the part I need, but numbering starts at 1!
plt.plot(x, w)

Also, if you have multiple axes on a figure, such as subplots, use the axes(h) command where h is the handle of the desired axes object to focus on that axes.

(don't have comment privileges yet, sorry for new answer!)

An easy way to plot separate frame for each iteration could be:

import matplotlib.pyplot as plt  
for grp in list_groups:
        plt.figure()
        plt.plot(grp)
        plt.show()

Then python will plot different frames.

One way I found after some struggling is creating a function which gets data_plot matrix, file name and order as parameter to create boxplots from the given data in the ordered figure (different orders = different figures) and save it under the given file_name.

def plotFigure(data_plot,file_name,order):
    fig = plt.figure(order, figsize=(9, 6))
    ax = fig.add_subplot(111)
    bp = ax.boxplot(data_plot)
    fig.savefig(file_name, bbox_inches='tight')
    plt.close()