Logo Questions Linux Laravel Mysql Ubuntu Git Menu
 

How do I get the slopes of an interpolation at regular time points on a cumulative sum plot?

Over at cross validated I asked a question about analyzing data by date but not wanting to generate spurious spikes and troughs by binning data by the month. For example if one pays a bill on the last day of each month but on one occasion one pays a few days late then the one month will reflect zero expense and the following month will reflect double the usual expense. All spurious junk.

One of the answers to my question explained the concept of interpolation using linear spline smoothing on the cumulative sum to overcome hiccoughs in binning. I am intrigued by it and want to implement it in R but cannot find any examples online. I do not just want to print plots. I want to get the instantaneous slope at each and every time point (maybe each day) but that slope should be derived from a spline that inputs points from a few days (or perhaps a few weeks or a few months) before to a few days after the time point. In other words, at the end of the day I want to get something such as a data frame in which one column is money per day or patients per week but that is not subject to vagaries such as whether I paid a few days late or whether there happened to be 5 operative days in the month (as opposed to the usual 4).

Here is some simplified simulation and plotting to show what I am up against.

library(lubridate)
library(ggplot2)
library(reshape2)
dates <- seq(as.Date("2010-02-01"), length=24, by="1 month") - 1
dates[5] <- dates[5]+3 #we are making one payment date that is 3 days late
dates#look how the payment date is the last day of every month except for
#2010-05 where it takes place on 2010-06-03 - naughty boy!
amounts <- rep(50,each=24)# pay $50 every month
register <- data.frame(dates,amounts)#this is the starting register or ledger
ggplot(data=register,aes(dates,amounts))+geom_point()#look carefully and you will see that 2010-05 has no dots in it and 2010-06 has two dots
register.by.month <- ddply(register,.(y=year(dates),month=month(dates)),summarise,month.tot=sum(amounts))#create a summary of totals by month but it lands up omiting a month in which nothing happened. Further badness is that it creates a new dataframe where one is not needed. Instead I created a new variable that allocates each date into a particular "zone" such as month or 
register$cutmonth <- as.Date(cut(register$dates, breaks = "month"))#until recently I did not know that the cut function can handle dates
table(register$cutmonth)#see how there are two payments in the month of 2010-06
#now lets look at what we paid each month. What is the total for each month
ggplot(register, aes(cutmonth, amounts))+ stat_summary(fun.y = sum, geom = "bar")#that is the truth but it is a useless truth

When one is late with a payment by a couple of days it appears as if the expense was zero in one month and double in the next. That is spurious

#so lets use cummulated expense over time
register$cumamount <- cumsum(register$amounts)
cum <- ggplot(data=register,aes(dates,cumamount))+geom_point()
cum+stat_smooth()

cumulative amount over time smooths out variability that changes an item's bin

#That was for everything the same every month, now lets introduce a situation where there is a trend that in the second year the amounts start to go up, 
increase <- c(rep(1,each=12),seq(from=1.01,to=1.9,length.out=12))
amounts.up <- round(amounts*increase,digits=2)#this is the monthly amount with a growth of amount in each month of the second year
register <- cbind(register,amounts.up)#add the variable to the data frarme
register$cumamount.up <- cumsum(register$amounts.up) #work out th cumulative sum for the new scenario
ggplot(data=register,aes(x=dates))+
   geom_point(aes(y=amounts, colour="amounts",shape="amounts"))+
   geom_point(aes(y=amounts.up, colour="amounts.up",shape="amounts.up"))# the plot of amount by date
#I am now going to plot the cumulative amount over time but now that I have two scenarios it is easier to deal with the data frame in long format (melted) rather than wide format (casted)
#before I can melt, the reshape2 package unforutnately can't handle date class so will have to turn them int o characters and then back again.
register[,c("dates","cutmonth")] <- lapply(register[,c("dates","cutmonth")],as.character)
register.long <- melt.data.frame(register,measure.vars=c("amounts","amounts.up"))
register.long[,c("dates","cutmonth")] <- lapply(register.long[,c("dates","cutmonth")],as.Date)
ggplot(register.long, aes(cutmonth,value))+ stat_summary(fun.y = sum, geom = "bar")+facet_grid(. ~ variable) #that is the truth but it is a useless truth, 
cum <- ggplot(data=register,aes(dates,cumamount))+geom_point()
#that is the truth but it is a useless truth. Furthermore it appears as if 2010-06 is similar to what is going on in 2011-12
#that is patently absurd. All that happened was that the 2010-05 payment was delayed by 3 days.

two scenarios but showing the amount of money paid in each month

#so lets use cummulated expense over time    
ggplot(data=register.long,aes(dates,c(cumamount,cumamount.up)))+geom_point() + scale_y_continuous(name='cumulative sum of amounts ($)')

Here we see the cumulative sum data for the two scenarios

So for the simple plot the variable interpolate.daily would be about $50/30.4 = $1.64 per day for every day of the year. For the second plot where the amount being paid every month starts to go up every month in the second year would be showing a daily rate of $1.64 per day for every day in the first year and for dates in the second year one would see daily rates gradually increasing from $1.64 per day to about $3.12 per day.

Thank you so much for reading this all the way to the end. You must have been as intrigued as I was!

like image 599
Farrel Avatar asked Dec 07 '11 00:12

Farrel


1 Answers

Here is one basic way to do it. Of course there are more complex options, and parameters to tweak, but this should be a good starting point.

dates <- seq(as.Date("2010-02-01"), length=24, by="1 month") - 1
dates[5] <- dates[5]+3
amounts <- rep(50,each=24)
increase <- c(rep(1,each=12),seq(from=1.01,to=1.9,length.out=12))
amounts.up <- round(amounts*increase,digits=2)

df = data.frame(dates=dates, cumamount.up=cumsum(amounts.up))

df.spline = splinefun(df$dates, df$cumamount.up)

newdates = seq(min(df$dates), max(df$dates), by=1)
money.per.day = df.spline(newdates, deriv=1)

If you plot it, you can see the interesting behavior of the splines:

plot(newdates, money.per.day, type='l')

enter image description here

like image 111
John Colby Avatar answered Sep 23 '22 18:09

John Colby