Logo Questions Linux Laravel Mysql Ubuntu Git Menu
 

ggplot: Adding Regression Line Equation and R2 with Facet [duplicate]

Tags:

r

ggplot2

I've created a faceted scatterplot with ggplot but I'm struggling to add the regression line equation to each of the facets. The simple case where there is no faceting has been answered here but this method won't extend to a faceted plot.

Any ideas how to accomplish this in a clean fashion?

like image 968
TheComeOnMan Avatar asked Oct 31 '13 06:10

TheComeOnMan


3 Answers

Here is an example starting from this answer

require(ggplot2)
require(plyr)

df <- data.frame(x = c(1:100))
df$y <- 2 + 3 * df$x + rnorm(100, sd = 40)


lm_eqn = function(df){
    m = lm(y ~ x, df);
    eq <- substitute(italic(y) == a + b %.% italic(x)*","~~italic(r)^2~"="~r2, 
         list(a = format(coef(m)[1], digits = 2), 
              b = format(coef(m)[2], digits = 2), 
             r2 = format(summary(m)$r.squared, digits = 3)))
    as.character(as.expression(eq));                 
}

Create two groups on which you want to facet

df$group <- c(rep(1:2,50))

Create the equation labels for the two groups

eq <- ddply(df,.(group),lm_eqn)

And plot

p <- ggplot(data = df, aes(x = x, y = y)) +
            geom_smooth(method = "lm", se=FALSE, color="black", formula = y ~ x) +
            geom_point()
p1 = p + geom_text(data=eq,aes(x = 25, y = 300,label=V1), parse = TRUE, inherit.aes=FALSE) + facet_grid(group~.)
p1 

enter image description here

like image 179
Jonas Tundo Avatar answered Nov 12 '22 08:11

Jonas Tundo


Using gridExtra you can arrange yours plots like this.

enter image description here

library(ggplot2)

library(ggplot2)
iris$x = iris$Sepal.Length 
iris$y = iris$Sepal.Width
xx <- range(iris$x)
yy <- range(iris$y)

ll <- by(iris,iris$Species,function(df){
  x.eq <- max(xx)-mean(xx)/2
  y.eq <- max(yy)*0.95
  p <- ggplot(df, aes(x, y)) +
    geom_point() +
    geom_smooth(method="lm") +
    annotate(x=x.eq, y =y.eq ,  geom='text',
              label = lm_eqn(df), size=5,parse=TRUE) +
    xlim(xx[1],xx[2])+ylim(yy[1],yy[2])
})

library(gridExtra)
do.call(grid.arrange,ll)
like image 24
agstudy Avatar answered Nov 12 '22 09:11

agstudy


Does this do what you want?

library(ggplot2); library(gridExtra)
ggplot(iris, aes(Sepal.Length, Sepal.Width)) +
  geom_point() +
  geom_smooth(method="lm") +
  facet_wrap(~ Species)

grid.newpage()
vpa_ <- viewport(width = 1, height = 1)
print(p, vp = vpa_)
grid.text("y ~ mx + b", x=0.3, y=0.8)
grid.text("y ~ mx + b", x=0.5, y=0.8)
grid.text("y ~ mx + b", x=0.8, y=0.8)

enter image description here

like image 5
sckott Avatar answered Nov 12 '22 07:11

sckott