Generating Symmetric Matrices in Numpy

Question

I am trying to generate symmetric matrices in numpy. Specifically, these matrices are to have random places entries, and in each entry the contents can be random. Along the main diagonal we are not concerned with what enties are in there, so I have randomized those as well.

The approach I have taken is to first generate a nxn all zero matrix and simply loop over the indices of the matrices. However, given considering looping is relatively expensive in python, I'm wondering if I can acheive the same thing without using python's for loops.

Is there some things built into numpy that allow me to acheive my goal more efficiently?

Here is my current code:

import numpy as np import random  def empty(x, y):     return x*0  b = np.fromfunction(empty, (n, n), dtype = int)  for i in range(0, n):     for j in range(0, n):         if i == j:             b[i][j] = random.randrange(-2000, 2000)         else:             switch = random.random()             random.seed()             if switch > random.random():                 a = random.randrange(-2000, 2000)                 b[i][j] = a                 b[j][i] = a             else:                 b[i][j] = 0                 b[j][i] = 0 

Answer 1

You could just do something like:

import numpy as np  N = 100 b = np.random.random_integers(-2000,2000,size=(N,N)) b_symm = (b + b.T)/2 

Where you can choose from whatever distribution you want in the np.random or equivalent scipy module.

Update: If you are trying to build graph-like structures, definitely check out the networkx package:

http://networkx.lanl.gov

which has a number of built-in routines to build graphs:

http://networkx.lanl.gov/reference/generators.html

Also if you want to add some number of randomly placed zeros, you can always generate a random set of indices and replace the values with zero.