Flyway not finding migrations when run from IntelliJ when using Gradle

Question

When I run my Spring Boot Kotlin application that uses Flyway from the command line, it seems to work, but from IntelliJ it fails. I created a minimal sample project that replicates the problem: https://github.com/pupeno/notflying

The error I get from IntelliJ is about the migrations not being found:

Caused by: java.lang.IllegalStateException: Cannot find migrations location in: [classpath:db/migration] (please add migrations or check your Flyway configuration)
    at org.springframework.util.Assert.state(Assert.java:94) ~[spring-core-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.boot.autoconfigure.flyway.FlywayAutoConfiguration$FlywayConfiguration.checkLocationExists(FlywayAutoConfiguration.java:184) ~[spring-boot-autoconfigure-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.boot.autoconfigure.flyway.FlywayAutoConfiguration$FlywayConfiguration.flyway(FlywayAutoConfiguration.java:149) ~[spring-boot-autoconfigure-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.boot.autoconfigure.flyway.FlywayAutoConfiguration$FlywayConfiguration$$EnhancerBySpringCGLIB$$ffc78d0a.CGLIB$flyway$0(<generated>) ~[spring-boot-autoconfigure-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.boot.autoconfigure.flyway.FlywayAutoConfiguration$FlywayConfiguration$$EnhancerBySpringCGLIB$$ffc78d0a$$FastClassBySpringCGLIB$$5b3da70f.invoke(<generated>) ~[spring-boot-autoconfigure-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:244) ~[spring-core-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.intercept(ConfigurationClassEnhancer.java:363) ~[spring-context-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.boot.autoconfigure.flyway.FlywayAutoConfiguration$FlywayConfiguration$$EnhancerBySpringCGLIB$$ffc78d0a.flyway(<generated>) ~[spring-boot-autoconfigure-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:na]
    at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:na]
    at java.base/java.lang.reflect.Method.invoke(Method.java:566) ~[na:na]
    at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:154) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    ... 27 common frames omitted

The migrations are there and correctly named as far as I can see:

PS C:\Users\pupeno\Temporary\notflying> dir .\src\main\resources\db\migration\


    Directory: C:\Users\pupeno\Temporary\notflying\src\main\resources\db\migration


Mode                LastWriteTime         Length Name
----                -------------         ------ ----
-a----       2019-08-26     08:32            718 V0001__create_countries_table.sql


PS C:\Users\pupeno\Temporary\notflying>

The IntelliJ configuration for running it looks like this:

I added:

logging.level.org.flywaydb=DEBUG

to application.properties and the full output of trying to start the application from IntelliJ looks like this:

"C:\Program Files\JetBrains\IntelliJ IDEA 2019.2\jbr\bin\java.exe" -XX:TieredStopAtLevel=1 -noverify -Dspring.output.ansi.enabled=always -Dcom.sun.management.jmxremote -Dspring.jmx.enabled=true -Dspring.liveBeansView.mbeanDomain -Dspring.application.admin.enabled=true "-javaagent:C:\Program Files\JetBrains\IntelliJ IDEA 2019.2\lib\idea_rt.jar=50536:C:\Program Files\JetBrains\IntelliJ IDEA 2019.2\bin" -Dfile.encoding=UTF-8 -classpath C:\Users\pupeno\Temporary\notflying\build\classes\java\main;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.boot\spring-boot-starter-data-jpa\2.1.7.RELEASE\5e4a5d5442f32f5e12b36674a620ec57b0b66c6e\spring-boot-starter-data-jpa-2.1.7.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.boot\spring-boot-starter-thymeleaf\2.1.7.RELEASE\cf9547e20aa6a32c0b0f53400db6eecfab660f86\spring-boot-starter-thymeleaf-2.1.7.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.boot\spring-boot-starter-web\2.1.7.RELEASE\fa43baf40bde3ecdb93ac9c545dd39f82ab29c35\spring-boot-starter-web-2.1.7.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\com.fasterxml.jackson.module\jackson-module-kotlin\2.9.9\446b0567b26965cf7db859ba48a73ab30b4016b7\jackson-module-kotlin-2.9.9.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.boot\spring-boot-devtools\2.1.7.RELEASE\5a846c6e9ab67a4cbf7c4f22bc13bcab188198f9\spring-boot-devtools-2.1.7.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.flywaydb\flyway-core\5.2.4\50a92d39554615bd4ff56d148a359b20dc17f655\flyway-core-5.2.4.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.jetbrains.kotlin\kotlin-reflect\1.2.71\7512db3b3182753bd2e48ce8d345abbadc40fe6b\kotlin-reflect-1.2.71.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.jetbrains.kotlin\kotlin-stdlib-jdk8\1.2.71\5470d1f752cd342edb77e1062bac07e838d2cea4\kotlin-stdlib-jdk8-1.2.71.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.boot\spring-boot-starter-aop\2.1.7.RELEASE\4577d056af1f823bb7730c99f43c3268dd697310\spring-boot-starter-aop-2.1.7.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.boot\spring-boot-starter-jdbc\2.1.7.RELEASE\3ea97a134b44a886ff529215e7bec04bfd93fa5b\spring-boot-starter-jdbc-2.1.7.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\javax.transaction\javax.transaction-api\1.3\e006adf5cf3cca2181d16bd640ecb80148ec0fce\javax.transaction-api-1.3.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\javax.xml.bind\jaxb-api\2.3.1\8531ad5ac454cc2deb9d4d32c40c4d7451939b5d\jaxb-api-2.3.1.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\com.h2database\h2\1.4.199\7bf08152984ed8859740ae3f97fae6c72771ae45\h2-1.4.199.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.hibernate\hibernate-core\5.3.10.Final\e608b854325005edbf43cb2b6041fdafd3f2eb57\hibernate-core-5.3.10.Final.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.data\spring-data-jpa\2.1.10.RELEASE\12639406aa28c3a5195a1a4c9077fe562f54bc31\spring-data-jpa-2.1.10.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework\spring-aspects\5.1.9.RELEASE\a8aec853c345ed54a99627cee9f755ce7dbb734\spring-aspects-5.1.9.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.boot\spring-boot-starter-json\2.1.7.RELEASE\9c12f046a7c4ae110d89163a491ad0d7cf036e79\spring-boot-starter-json-2.1.7.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.boot\spring-boot-starter\2.1.7.RELEASE\e23f4e9460e0e2220b444e40fc7fd6e95f66e0fe\spring-boot-starter-2.1.7.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.thymeleaf\thymeleaf-spring5\3.0.11.RELEASE\de7bf0adf13b5e9c4811f95edf18279da193c0c6\thymeleaf-spring5-3.0.11.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.thymeleaf.extras\thymeleaf-extras-java8time\3.0.4.RELEASE\36e7175ddce36c486fff4578b5af7bb32f54f5df\thymeleaf-extras-java8time-3.0.4.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.boot\spring-boot-starter-tomcat\2.1.7.RELEASE\11f2a86aefefba72a4efe5ff18f4165a4b4e78b\spring-boot-starter-tomcat-2.1.7.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.hibernate.validator\hibernate-validator\6.0.17.Final\af73055fc4a103ab347c56e7da5a143d68a0170\hibernate-validator-6.0.17.Final.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework\spring-webmvc\5.1.9.RELEASE\b9d4a2140488f0e6f9aa231e7938ae18da77b637\spring-webmvc-5.1.9.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework\spring-web\5.1.9.RELEASE\9fe4390420fdd0b63dc4ed90d9027dafa9f74f80\spring-web-5.1.9.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\com.fasterxml.jackson.datatype\jackson-datatype-jdk8\2.9.9\4b04126963103216c9c43b0f34bbc36315654204\jackson-datatype-jdk8-2.9.9.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\com.fasterxml.jackson.datatype\jackson-datatype-jsr310\2.9.9\a33df137557793b0404a486888dbe049f7abeeeb\jackson-datatype-jsr310-2.9.9.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\com.fasterxml.jackson.module\jackson-module-parameter-names\2.9.9\a92facb55a2538e7b2fe14294570a18b823ad431\jackson-module-parameter-names-2.9.9.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\com.fasterxml.jackson.core\jackson-databind\2.9.9\d6eb9817d9c7289a91f043ac5ee02a6b3cc86238\jackson-databind-2.9.9.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\com.fasterxml.jackson.core\jackson-annotations\2.9.0\7c10d545325e3a6e72e06381afe469fd40eb701\jackson-annotations-2.9.0.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.jetbrains.kotlin\kotlin-stdlib-jdk7\1.2.71\4ce93f539e2133f172f1167291a911f83400a5d0\kotlin-stdlib-jdk7-1.2.71.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.jetbrains.kotlin\kotlin-stdlib\1.2.71\d9717625bb3c731561251f8dd2c67a1011d6764c\kotlin-stdlib-1.2.71.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.boot\spring-boot-autoconfigure\2.1.7.RELEASE\2c9d3e2c6ea3cb435e99e2973009636b62a9d816\spring-boot-autoconfigure-2.1.7.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.boot\spring-boot\2.1.7.RELEASE\1599a2ad1fc6d36dbfc2a7c0dd5dab3a0bb27c61\spring-boot-2.1.7.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework\spring-context\5.1.9.RELEASE\c37f8fe15a5ae4ea1f351bd46167fd492a84eefa\spring-context-5.1.9.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework\spring-aop\5.1.9.RELEASE\bc2312ffad02251b9d472e4a7c0e472a58f50fbf\spring-aop-5.1.9.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.aspectj\aspectjweaver\1.9.4\9205229878f3d62fbd3a32a0fb6be2d6ad8589a9\aspectjweaver-1.9.4.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\com.zaxxer\HikariCP\3.2.0\6c66db1c636ee90beb4c65fe34abd8ba9396bca6\HikariCP-3.2.0.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework\spring-orm\5.1.9.RELEASE\220169d217f7114706141fc0afba425a5b368dce\spring-orm-5.1.9.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework\spring-jdbc\5.1.9.RELEASE\3fd70356ba8d7c00c4081c1a207766352624414e\spring-jdbc-5.1.9.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\javax.activation\javax.activation-api\1.2.0\85262acf3ca9816f9537ca47d5adeabaead7cb16\javax.activation-api-1.2.0.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.hibernate.common\hibernate-commons-annotations\5.0.4.Final\965a18fdf939ee75e41f7918532d37b3a8350535\hibernate-commons-annotations-5.0.4.Final.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.jboss.logging\jboss-logging\3.3.2.Final\3789d00e859632e6c6206adc0c71625559e6e3b0\jboss-logging-3.3.2.Final.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\javax.persistence\javax.persistence-api\2.2\25665ac8c0b62f50e6488173233239120fc52c96\javax.persistence-api-2.2.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.javassist\javassist\3.23.2-GA\c5afe660a95e87ceb518e4f5cf02f5c56b547683\javassist-3.23.2-GA.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\net.bytebuddy\byte-buddy\1.9.16\e7d63009be7b87ff1f15b72e5b8c59c897a8d8bd\byte-buddy-1.9.16.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\antlr\antlr\2.7.7\83cd2cd674a217ade95a4bb83a8a14f351f48bd0\antlr-2.7.7.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.jboss\jandex\2.0.5.Final\7060f67764565b9ee9d467e3ed0cb8a9c601b23a\jandex-2.0.5.Final.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\com.fasterxml\classmate\1.4.0\291658ac2ce2476256c7115943652c0accb5c857\classmate-1.4.0.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.dom4j\dom4j\2.1.1\3dce5dbb3571aa820c677fadd8349bfa8f00c199\dom4j-2.1.1.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.data\spring-data-commons\2.1.10.RELEASE\c73a76070181b59b19df6893e1ca729263a69b47\spring-data-commons-2.1.10.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework\spring-tx\5.1.9.RELEASE\a9125e2c8eeb193030f3972c6293616943c55ef2\spring-tx-5.1.9.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework\spring-beans\5.1.9.RELEASE\5a03b3983108d73978aec2fa3e681aedad6782c\spring-beans-5.1.9.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework\spring-expression\5.1.9.RELEASE\db3a2468c1b7d697ec3b3ec6e5652dc282994fe3\spring-expression-5.1.9.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework\spring-core\5.1.9.RELEASE\dc3815439579b4fa0c19970e6b8e5d774af8d988\spring-core-5.1.9.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.thymeleaf\thymeleaf\3.0.11.RELEASE\628ebb91f520053d4120b7b18bf78ff295d57461\thymeleaf-3.0.11.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework.boot\spring-boot-starter-logging\2.1.7.RELEASE\6e829f739992a7f368c0af44a08ed89ad2a1972f\spring-boot-starter-logging-2.1.7.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\ch.qos.logback\logback-classic\1.2.3\7c4f3c474fb2c041d8028740440937705ebb473a\logback-classic-1.2.3.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.apache.logging.log4j\log4j-to-slf4j\2.11.2\6d37bf7b046c0ce2669f26b99365a2cfa45c4c18\log4j-to-slf4j-2.11.2.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.slf4j\jul-to-slf4j\1.7.26\8031352b2bb0a49e67818bf04c027aa92e645d5c\jul-to-slf4j-1.7.26.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.slf4j\slf4j-api\1.7.26\77100a62c2e6f04b53977b9f541044d7d722693d\slf4j-api-1.7.26.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\javax.annotation\javax.annotation-api\1.3.2\934c04d3cfef185a8008e7bf34331b79730a9d43\javax.annotation-api-1.3.2.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.apache.tomcat.embed\tomcat-embed-websocket\9.0.22\45974d3443cc15ad9d10239d762d5e15759e6364\tomcat-embed-websocket-9.0.22.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.apache.tomcat.embed\tomcat-embed-core\9.0.22\79f39903498b28adacb18fe2ea046edd306295a6\tomcat-embed-core-9.0.22.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.apache.tomcat.embed\tomcat-embed-el\9.0.22\4da4b778b635a7e78ca7cd7288253e2e47b88a9f\tomcat-embed-el-9.0.22.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\javax.validation\validation-api\2.0.1.Final\cb855558e6271b1b32e716d24cb85c7f583ce09e\validation-api-2.0.1.Final.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\com.fasterxml.jackson.core\jackson-core\2.9.9\bfff5af9fb8347d26bbb7959cb9b4fe9a2b0ca5e\jackson-core-2.9.9.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.jetbrains.kotlin\kotlin-stdlib-common\1.2.71\ba18ca1aa0e40eb6f1865b324af2f4cbb691c1ec\kotlin-stdlib-common-1.2.71.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.yaml\snakeyaml\1.23\ec62d74fe50689c28c0ff5b35d3aebcaa8b5be68\snakeyaml-1.23.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.jetbrains\annotations\13.0\919f0dfe192fb4e063e7dacadee7f8bb9a2672a9\annotations-13.0.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.springframework\spring-jcl\5.1.9.RELEASE\7c372790c999777d20f364960cf557dd74f890cf\spring-jcl-5.1.9.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.attoparser\attoparser\2.0.5.RELEASE\a93ad36df9560de3a5312c1d14f69d938099fa64\attoparser-2.0.5.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.unbescape\unbescape\1.1.6.RELEASE\7b90360afb2b860e09e8347112800d12c12b2a13\unbescape-1.1.6.RELEASE.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\ch.qos.logback\logback-core\1.2.3\864344400c3d4d92dfeb0a305dc87d953677c03c\logback-core-1.2.3.jar;C:\Users\pupeno\.gradle\caches\modules-2\files-2.1\org.apache.logging.log4j\log4j-api\2.11.2\f5e9a2ffca496057d6891a3de65128efc636e26e\log4j-api-2.11.2.jar tech.flexpoint.notflying.NotflyingApplicationKt

  .   ____          _            __ _ _
 /\\ / ___'_ __ _ _(_)_ __  __ _ \ \ \ \
( ( )\___ | '_ | '_| | '_ \/ _` | \ \ \ \
 \\/  ___)| |_)| | | | | || (_| |  ) ) ) )
  '  |____| .__|_| |_|_| |_\__, | / / / /
 =========|_|==============|___/=/_/_/_/
 :: Spring Boot ::        (v2.1.7.RELEASE)

2019-08-26 10:36:00.478  INFO 7132 --- [  restartedMain] t.f.notflying.NotflyingApplicationKt     : Starting NotflyingApplicationKt on Utopia-Planitia with PID 7132 (C:\Users\pupeno\Temporary\notflying\build\classes\java\main started by pupeno in C:\Users\pupeno\Temporary\notflying)
2019-08-26 10:36:00.484  INFO 7132 --- [  restartedMain] t.f.notflying.NotflyingApplicationKt     : No active profile set, falling back to default profiles: default
2019-08-26 10:36:00.549  INFO 7132 --- [  restartedMain] .e.DevToolsPropertyDefaultsPostProcessor : Devtools property defaults active! Set 'spring.devtools.add-properties' to 'false' to disable
2019-08-26 10:36:00.550  INFO 7132 --- [  restartedMain] .e.DevToolsPropertyDefaultsPostProcessor : For additional web related logging consider setting the 'logging.level.web' property to 'DEBUG'
2019-08-26 10:36:01.616  INFO 7132 --- [  restartedMain] .s.d.r.c.RepositoryConfigurationDelegate : Bootstrapping Spring Data repositories in DEFAULT mode.
2019-08-26 10:36:01.641  INFO 7132 --- [  restartedMain] .s.d.r.c.RepositoryConfigurationDelegate : Finished Spring Data repository scanning in 16ms. Found 0 repository interfaces.
2019-08-26 10:36:02.113  INFO 7132 --- [  restartedMain] trationDelegate$BeanPostProcessorChecker : Bean 'org.springframework.transaction.annotation.ProxyTransactionManagementConfiguration' of type [org.springframework.transaction.annotation.ProxyTransactionManagementConfiguration$$EnhancerBySpringCGLIB$$e16cf649] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-08-26 10:36:02.433  INFO 7132 --- [  restartedMain] o.s.b.w.embedded.tomcat.TomcatWebServer  : Tomcat initialized with port(s): 8080 (http)
2019-08-26 10:36:02.460  INFO 7132 --- [  restartedMain] o.apache.catalina.core.StandardService   : Starting service [Tomcat]
2019-08-26 10:36:02.460  INFO 7132 --- [  restartedMain] org.apache.catalina.core.StandardEngine  : Starting Servlet engine: [Apache Tomcat/9.0.22]
2019-08-26 10:36:02.696  INFO 7132 --- [  restartedMain] o.a.c.c.C.[Tomcat].[localhost].[/]       : Initializing Spring embedded WebApplicationContext
2019-08-26 10:36:02.696  INFO 7132 --- [  restartedMain] o.s.web.context.ContextLoader            : Root WebApplicationContext: initialization completed in 2146 ms
2019-08-26 10:36:02.831  WARN 7132 --- [  restartedMain] ConfigServletWebServerApplicationContext : Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flyway' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.flywaydb.core.Flyway]: Factory method 'flyway' threw exception; nested exception is java.lang.IllegalStateException: Cannot find migrations location in: [classpath:db/migration] (please add migrations or check your Flyway configuration)
2019-08-26 10:36:02.834  INFO 7132 --- [  restartedMain] o.apache.catalina.core.StandardService   : Stopping service [Tomcat]
2019-08-26 10:36:02.848  INFO 7132 --- [  restartedMain] ConditionEvaluationReportLoggingListener : 

Error starting ApplicationContext. To display the conditions report re-run your application with 'debug' enabled.
2019-08-26 10:36:02.864 ERROR 7132 --- [  restartedMain] o.s.boot.SpringApplication               : Application run failed

org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flyway' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.flywaydb.core.Flyway]: Factory method 'flyway' threw exception; nested exception is java.lang.IllegalStateException: Cannot find migrations location in: [classpath:db/migration] (please add migrations or check your Flyway configuration)
    at org.springframework.beans.factory.support.ConstructorResolver.instantiate(ConstructorResolver.java:627) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:456) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1321) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1160) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:555) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:515) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:320) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:318) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:307) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1105) ~[spring-context-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:867) ~[spring-context-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:549) ~[spring-context-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.refresh(ServletWebServerApplicationContext.java:141) ~[spring-boot-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:743) ~[spring-boot-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:390) ~[spring-boot-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.boot.SpringApplication.run(SpringApplication.java:312) ~[spring-boot-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.boot.SpringApplication.run(SpringApplication.java:1214) ~[spring-boot-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.boot.SpringApplication.run(SpringApplication.java:1203) ~[spring-boot-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at tech.flexpoint.notflying.NotflyingApplicationKt.main(NotflyingApplication.kt:13) ~[main/:na]
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:na]
    at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:na]
    at java.base/java.lang.reflect.Method.invoke(Method.java:566) ~[na:na]
    at org.springframework.boot.devtools.restart.RestartLauncher.run(RestartLauncher.java:49) ~[spring-boot-devtools-2.1.7.RELEASE.jar:2.1.7.RELEASE]
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.flywaydb.core.Flyway]: Factory method 'flyway' threw exception; nested exception is java.lang.IllegalStateException: Cannot find migrations location in: [classpath:db/migration] (please add migrations or check your Flyway configuration)
    at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:185) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.beans.factory.support.ConstructorResolver.instantiate(ConstructorResolver.java:622) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    ... 26 common frames omitted
Caused by: java.lang.IllegalStateException: Cannot find migrations location in: [classpath:db/migration] (please add migrations or check your Flyway configuration)
    at org.springframework.util.Assert.state(Assert.java:94) ~[spring-core-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.boot.autoconfigure.flyway.FlywayAutoConfiguration$FlywayConfiguration.checkLocationExists(FlywayAutoConfiguration.java:184) ~[spring-boot-autoconfigure-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.boot.autoconfigure.flyway.FlywayAutoConfiguration$FlywayConfiguration.flyway(FlywayAutoConfiguration.java:149) ~[spring-boot-autoconfigure-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.boot.autoconfigure.flyway.FlywayAutoConfiguration$FlywayConfiguration$$EnhancerBySpringCGLIB$$616ac3e9.CGLIB$flyway$1(<generated>) ~[spring-boot-autoconfigure-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.boot.autoconfigure.flyway.FlywayAutoConfiguration$FlywayConfiguration$$EnhancerBySpringCGLIB$$616ac3e9$$FastClassBySpringCGLIB$$a2f39a48.invoke(<generated>) ~[spring-boot-autoconfigure-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at org.springframework.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:244) ~[spring-core-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.intercept(ConfigurationClassEnhancer.java:363) ~[spring-context-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    at org.springframework.boot.autoconfigure.flyway.FlywayAutoConfiguration$FlywayConfiguration$$EnhancerBySpringCGLIB$$616ac3e9.flyway(<generated>) ~[spring-boot-autoconfigure-2.1.7.RELEASE.jar:2.1.7.RELEASE]
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:na]
    at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:na]
    at java.base/java.lang.reflect.Method.invoke(Method.java:566) ~[na:na]
    at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:154) ~[spring-beans-5.1.9.RELEASE.jar:5.1.9.RELEASE]
    ... 27 common frames omitted


Process finished with exit code 0

I've tried this, with the same result, both with the JDK provided by IntelliJ (version 11 I think) as well as Oracle JDK 11:

PS C:\Users\pupeno\Temporary\notflying> java --version
java 12.0.2 2019-07-16
Java(TM) SE Runtime Environment (build 12.0.2+10)
Java HotSpot(TM) 64-Bit Server VM (build 12.0.2+10, mixed mode, sharing)

When I trigger a build in IntelliJ, I get some warning (not sure if relevant):

I re-created the project with Maven and it seems to work out of the box, with no issues. So, I'd say, the problem seems to be in how IntelliJ imports Gradle projects.

Answer 1

Perfectly work on my machine

Probably migrations not copied to build/resources/main/db directory

Try next:

1. Delete build directory
2. Invalidate idea cache link
3. Reimport gradle link

If that doesn't help replace Build to gradle build in configuration settings:

Also maybe gradle not have access to read migration file or parent directory. Check permissions in file system or try clone github repository to another folder.

Answer 2

Looks like Intellij might have created the directory as

src/main/resources/db.migration

with the files in a directory called db.migration, instead of

src/main/resources/db/migration

with the files in a directory called migration.

Answer 3

My try, which succeeded:

1. Rename to a name that isn't your name in mind.
2. Run gradle clean and start test.
3. Expect: No migrations found.
4. Rename it again to your desired name. Run the test again.
5. Expect: Migrations found!

Its definitely a bug in IntelliJ/Gradle where it doesn't detect resources to import when there is no builds exists before its compilation. Making changes to the script refreshes its state, and automatically imports the resource afterwards.