i have a tab separated text file like this small example:
chr1 100499714 100499715 1
chr1 100502177 100502178 10
chr1 100502181 100502182 2
chr1 100502191 100502192 18
chr1 100502203 100502204 45
in the new file that I will make:
1- I want to select the rows based on the 4th column meaning in the value of 4th column is at least 10, I will keep the entire row otherwise will be filtered out.
2- in the next step the 4th column will be removed. the result will look like this:
chr1 100502177 100502178
chr1 100502191 100502192
chr1 100502203 100502204
to get such results I have tried the following code in awk:
cat input.txt | awk '{print $1 "\t" $2 "\t" $3}' > out.txt
but I do not know how to implement the filtering step. do you know how to fix the code?
Just put the condition before output:
cat input.txt | awk '$4 >= 10 {print $1 "\t" $2 "\t" $3}' > out.txt
If you love us? You can donate to us via Paypal or buy me a coffee so we can maintain and grow! Thank you!
Donate Us With