Evaluating a statistical model in R

Question

I have a very big data set (ds). One of its columns is Popularity, of type factor ('High' / ' Low').

I split the data to 70% and 30% in order to create a training set (ds_tr) and a test set (ds_te).

I have created the following model using a Logistic regression:

mdl <- glm(formula = popularity ~ . -url , family= "binomial", data = ds_tr )

then I created a predict object (will do it again for ds_te)

y_hat = predict(mdl, data = ds_tr - url , type = 'response')

I want to find the precision value which corresponds to a cutoff threshold of 0.5 and find the recall value which corresponds to a cutoff threshold of 0.5, so I did:

library(ROCR)
pred <- prediction(y_hat, ds_tr$popularity)
perf <- performance(pred, "prec", "rec")

The result is a table of many values

str(perf)

Formal class 'performance' [package "ROCR"] with 6 slots
  ..@ x.name      : chr "Recall"
  ..@ y.name      : chr "Precision"
  ..@ alpha.name  : chr "Cutoff"
  ..@ x.values    :List of 1
  .. ..$ : num [1:27779] 0.00 7.71e-05 7.71e-05 1.54e-04 2.31e-04 ...
  ..@ y.values    :List of 1
  .. ..$ : num [1:27779] NaN 1 0.5 0.667 0.75 ...
  ..@ alpha.values:List of 1
  .. ..$ : num [1:27779] Inf 0.97 0.895 0.89 0.887 ...

How do I find the specific precision and recall values corresponding to a cutoff threshold of 0.5?

Answer 1

Acces the slots of performance object (through the combination of @ + list)

We create a dataset with all possible values:

probab.cuts <- data.frame([email protected][[1]], [email protected][[1]], [email protected][[1]])

You can view all associated values

probab.cuts

If you want to select the requested values, it is trivial to do:

tail(probab.cuts[probab.cuts$cut > 0.5,], 1)

Manual check

tab <- table(ds_tr$popularity, y_hat > 0.5)
tab[4]/(tab[4]+tab[2]) # recall
tab[4]/(tab[4]+tab[3]) # precision