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I have python 2.6.6 installed in my oracle linux
I ran the command to install the package
pip install scipy
However I am getting the following error
[root@bigdatadev3 Downloads]# pip install scipy
DEPRECATION: Python 2.6 is no longer supported by the Python core team, please upgrade your Python. A future version of pip will drop support for Python 2.6
Collecting scipy
Using cached scipy-0.18.1.tar.gz
Building wheels for collected packages: scipy
Running setup.py bdist_wheel for scipy ... error
Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-zu4ibh/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpDdmSFupip-wheel- --python-tag cp26:
usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
or: -c --help [cmd1 cmd2 ...]
or: -c --help-commands
or: -c cmd --help
error: invalid command 'bdist_wheel'
----------------------------------------
Failed building wheel for scipy
Running setup.py clean for scipy
Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-zu4ibh/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" clean --all:
`setup.py clean` is not supported, use one of the following instead:
- `git clean -xdf` (cleans all files)
- `git clean -Xdf` (cleans all versioned files, doesn't touch
files that aren't checked into the git repo)
Add `--force` to your command to use it anyway if you must (unsupported).
----------------------------------------
Failed cleaning build dir for scipy
Failed to build scipy
Installing collected packages: scipy
Running setup.py install for scipy ... error
Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-zu4ibh/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-RLPNZW-record/install-record.txt --single-version-externally-managed --compile:
Note: if you need reliable uninstall behavior, then install
with pip instead of using `setup.py install`:
- `pip install .` (from a git repo or downloaded source
release)
- `pip install scipy` (last SciPy release on PyPI)
lapack_opt_info:
openblas_lapack_info:
libraries openblas not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
NOT AVAILABLE
lapack_mkl_info:
libraries mkl_rt not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas,tatlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries tatlas,tatlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries tatlas,tatlas not found in /usr/lib64/sse2
libraries lapack_atlas not found in /usr/lib64/sse2
libraries tatlas,tatlas not found in /usr/lib64
libraries lapack_atlas not found in /usr/lib64
libraries tatlas,tatlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
libraries satlas,satlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries satlas,satlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries satlas,satlas not found in /usr/lib64/sse2
libraries lapack_atlas not found in /usr/lib64/sse2
libraries satlas,satlas not found in /usr/lib64
libraries lapack_atlas not found in /usr/lib64
libraries satlas,satlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/sse2
libraries lapack_atlas not found in /usr/lib64/sse2
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
libraries lapack_atlas not found in /usr/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
libraries f77blas,cblas,atlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries f77blas,cblas,atlas not found in /usr/lib64/sse2
libraries lapack_atlas not found in /usr/lib64/sse2
libraries f77blas,cblas,atlas not found in /usr/lib64
libraries lapack_atlas not found in /usr/lib64
libraries f77blas,cblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/system_info.py:1532: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
lapack_info:
libraries lapack not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
NOT AVAILABLE
/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/system_info.py:1543: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
warnings.warn(LapackNotFoundError.__doc__)
lapack_src_info:
NOT AVAILABLE
/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/system_info.py:1546: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
warnings.warn(LapackSrcNotFoundError.__doc__)
NOT AVAILABLE
Running from scipy source directory.
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-zu4ibh/scipy/setup.py", line 415, in <module>
setup_package()
File "/tmp/pip-build-zu4ibh/scipy/setup.py", line 411, in setup_package
setup(**metadata)
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/core.py", line 135, in setup
config = configuration()
File "/tmp/pip-build-zu4ibh/scipy/setup.py", line 335, in configuration
config.add_subpackage('scipy')
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/misc_util.py", line 1000, in add_subpackage
caller_level = 2)
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/misc_util.py", line 969, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/misc_util.py", line 906, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 15, in configuration
config.add_subpackage('linalg')
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/misc_util.py", line 1000, in add_subpackage
caller_level = 2)
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/misc_util.py", line 969, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/misc_util.py", line 906, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/linalg/setup.py", line 20, in configuration
raise NotFoundError('no lapack/blas resources found')
numpy.distutils.system_info.NotFoundError: no lapack/blas resources found
----------------------------------------
Command "/usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-zu4ibh/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-RLPNZW-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-zu4ibh/scipy/
What am I missing here?
Issue Resolved
I resolved the issue as follows
yum install lapack and yum install blas-devel lapack-devel
pip install scipy
It took sometime to execute Running setup.py install for scipy ... but finally it's installed now
347
Install SciPy using pip We can install the SciPy library by using pip command; run the following command in the terminal: pip install scipy.
Issue Resolved
I resolved the issue as follows
yum install lapack and yum install blas-devel lapack-devel
pip install scipy
It took sometime to execute Running setup.py install for scipy ...
but finally it's installed now
77
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