Error Installing Atomic

Question

I'm trying to install gems to my new Ruby project using bundle install. I've set the version of Ruby using rbenv on my OS X 10.8.4 box. I get the following error:

An error occurred while installing atomic (1.1.13), and Bundler cannot continue.
Make sure that `gem install atomic -v '1.1.13'` succeeds before bundling.
Kikime:jazzcatalog curt$ gem install atomic
Building native extensions.  This could take a while...
Successfully installed atomic-1.1.13
1 gem installed
Kikime:jazzcatalog curt$ rbenv rehash
Kikime:jazzcatalog curt$ bundle install
Fetching gem metadata from https://rubygems.org/.........
Fetching gem metadata from https://rubygems.org/..
Using rake (10.1.0) 
Using i18n (0.6.5) 
Using minitest (4.7.5) 
Using multi_json (1.7.9) 
Installing atomic (1.1.13) 
Gem::Installer::ExtensionBuildError: ERROR: Failed to build gem native extension.

/Users/curt/.rbenv/versions/2.0.0-p247/bin/ruby extconf.rb 
/Users/curt/.rbenv/versions/2.0.0-p247/bin/ruby: invalid option -R  (-h will show valid       options) (RuntimeError)


Gem files will remain installed in /Volumes/Data     RAID/htdocs/jazzcatalog/vendor/bundle/gems/atomic-1.1.13 for inspection.
Results logged to /Volumes/Data RAID/htdocs/jazzcatalog/vendor/bundle/gems/atomic- 1.1.13/ext/gem_make.out

An error occurred while installing atomic (1.1.13), and Bundler cannot continue.
Make sure that `gem install atomic -v '1.1.13'` succeeds before bundling.

The first two lines are the end of the output from first attempt. As you can see, I then successfully installed atomic as requested. I then tried again and got the same error. I've seen a few errors with installing atomic, but none like this one. It seems to have a problem with the option -R. Since I didn't enter it in the first place, I don't know where to change it.

Update

I started all over rbenv set to version 2.0.0-p0 and and ran rails new jazz catalog -d mysql. It died at the same place with this error:

Installing atomic (1.1.13)

Gem::Installer::ExtensionBuildError: ERROR: Failed to build gem native extension.

/Users/curt/.rbenv/versions/2.0.0-p0/bin/ruby extconf.rb 
creating Makefile

make
compiling atomic_reference.c
 atomic_reference.c:50:9: warning: implicit declaration of function  'OSAtomicCompareAndSwap64' is invalid in C99 [-Wimplicit-function-declaration]
if (OSAtomicCompareAndSwap64(expect_value, new_value, &DATA_PTR(self))) {
    ^
1 warning generated.
linking shared-object atomic_reference.bundle

make install
/usr/bin/install -c -m 0755 atomic_reference.bundle /Volumes/Data   RAID/htdocs/jazzcatalog/vendor/bundle/gems/atomic-1.1.13/lib
usage: install [-bCcpSsv] [-B suffix] [-f flags] [-g group] [-m mode]
           [-o owner] file1 file2
   install [-bCcpSsv] [-B suffix] [-f flags] [-g group] [-m mode]
           [-o owner] file1 ... fileN directory
   install -d [-v] [-g group] [-m mode] [-o owner] directory ...
make: *** [install-so] Error 64


Gem files will remain installed in /Volumes/Data     RAID/htdocs/jazzcatalog/vendor/bundle/gems/atomic-1.1.13 for inspection.
Results logged to /Volumes/Data RAID/htdocs/jazzcatalog/vendor/bundle/gems/atomic- 1.1.13/ext/gem_make.out
An error occurred while installing atomic (1.1.13), and Bundler cannot continue.
Make sure that `gem install atomic -v '1.1.13'` succeeds before bundling.

SOLVED Sigh - does not handle spaces in path

Answer 1

I had this problem. It turned out to be caused by installing Mac OS 10.9 (Mavericks), since Mavericks has a new stand alone command line tools separate from Xcode. To solve this, I deleted /Applications/Xcode and then installed the stand alone command line tools via:

Note: First line may not be needed, see comments below

sudo rm -rf /Applications/Xcode
xcode-select --install

then click 'install' from the OSX pop up window

source: http://www.computersnyou.com/2025/2013/06/install-command-line-tools-in-osx-10-9-mavericks-how-to/

Answer 2

For those who reach this page by googling, I solved a similar issue while Installing atomic (1.1.13) on mac this way:

    sudo ln -s /usr/bin/llvm-gcc-4.2 /usr/bin/gcc-4.2

It seems to be because of conflicting Xcode updates.

Answer 3

The error messages don't give the slightest clue as to what the real problem is. Bundler or a component it calls does not properly handle directory names with spaces in them. In my case it was .../Data RAID/... that caused the problem. Once I moved the project to a different drive where there would be no spaces in the path, everything worked fine. It appears it may be only the location of the gems that are the issue. In an earlier attempt, I created a project where the gems weren't located in a path containing spaces, but the project was. It didn't have any problems as far as I went with it. Notice also that the gem install atomic was successful.