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convert binary string to numpy array

Assume I have the string:

my_data = '\x00\x00\x80?\x00\x00\x00@\x00\x00@@\x00\x00\x80@'

Where I got it is irrelevant, but for the sake of having something concrete, assume I read it from a binary file.

I know my string is the binary representation of 4 (4-byte) floats. I would like to get those floats as a numpy array. I could do:

import struct
import numpy as np
tple = struct.unpack( '4f', my_data )
my_array = np.array( tple, dtype=np.float32 )

But it seems silly to create an intermediate tuple. Is there a way to do this operation without creating an intermediate tuple?

EDIT

I would also like to be able to construct the array in such a way that I can specify the endianness of the string.

like image 858
mgilson Avatar asked Aug 01 '12 13:08

mgilson


1 Answers

>>> np.frombuffer(b'\x00\x00\x80?\x00\x00\x00@\x00\x00@@\x00\x00\x80@', dtype='<f4') # or dtype=np.dtype('<f4'), or np.float32 on a little-endian system (which most computers are these days)
array([ 1.,  2.,  3.,  4.], dtype=float32)

Or, if you want big-endian:

>>> np.frombuffer(b'\x00\x00\x80?\x00\x00\x00@\x00\x00@@\x00\x00\x80@', dtype='>f4') # or dtype=np.dtype('>f4'), or np.float32  on a big-endian system
array([  4.60060299e-41,   8.96831017e-44,   2.30485571e-41,
         4.60074312e-41], dtype=float32)

The b isn't necessary prior to Python 3, of course.

In fact, if you actually are using a binary file to load the data from, you could even skip the using-a-string step and load the data directly from the file with numpy.fromfile().

Also, dtype reference, just in case: http://docs.scipy.org/doc/numpy/reference/arrays.dtypes.html

like image 140
JAB Avatar answered Oct 25 '22 21:10

JAB