I have a Fortran module which I am trying to compile with f2py (listed below). When I remove the module declaration and leave the subroutine in the file by itself, everything works fine. However, if the module is declared as shown below, I get the following results:
> f2py.py -c -m its --compiler=mingw itimes-s2.f
...
Reading fortran codes...
Reading file 'itimes-s2.f' (format:fix,strict)
crackline: groupcounter=1 groupname={0: '', 1: 'module', 2: 'interface', 3: 'subroutine'}
crackline: Mismatch of blocks encountered. Trying to fix it by assuming "end" statement.
...
c:\users\astay13\appdata\local\temp\tmpgh5ag8\Release\users\astay13\appdata\local\temp\tmpgh5ag8\src.win32-3.2\itsmodule.o:itsmodule.c:(.data+0xec): undefined reference to `itimes_'
collect2: ld returned 1 exit status
What is different about compiling a module or subroutine in f2py? Have I left something important out in the module that causes f2py to have trouble? Note that the module compiles fine when I use gfortran alone.
Software: Windows 7; gcc, gfortran 4.6.1 (MinGW); python 3.2.2; f2py v2
itimes-s2.f:
module its
contains
subroutine itimes(infile,outfile)
implicit none
! Constants
integer, parameter :: dp = selected_real_kind(15)
! Subroutine Inputs
character(*), intent(in) :: infile
character(*), intent(in) :: outfile
! Internal variables
real(dp) :: num
integer :: inu
integer :: outu
integer :: ios
inu = 11
outu = 22
open(inu,file=infile,action='read')
open(outu,file=outfile,action='write',access='append')
do
read(inu,*,IOSTAT=ios) num
if (ios < 0) exit
write(outu,*) num**2
end do
end subroutine itimes
end module its
How does F2PY work? F2PY works by creating an extension module that can be imported in Python using the import keyword. The module contains automatically generated wrapper functions that can be called from Python, acting as an interface between Python and the compiled Fortran routines.
F2PY is a tool that provides an easy connection between Python and Fortran languages. F2PY is part of NumPy. F2PY creates extension modules from (handwritten or F2PY generated) signature files or directly from Fortran sources.
You are trying to have a Fortran module in a Python module. If you want that, the names must be different, e.g.
f2py.py -c -m SOMEDIFFERENTNAME itimes-s2.f
The result will be called as pythonmodule.fortranmodule.yourfunction()
.
You can also import it as
from pythonmodule import fortranmodule
fortranmodule.yourfunction()
Otherwise it worked on my machine.
For f2py to work you need to have a signature file to direct the interface creation or modify your source code with f2py comments to help with the interface. See http://cens.ioc.ee/projects/f2py2e/usersguide/#signature-file for more information.
From that site:
C FILE: FIB3.F
SUBROUTINE FIB(A,N)
C
C CALCULATE FIRST N FIBONACCI NUMBERS
C
INTEGER N
REAL*8 A(N)
Cf2py intent(in) n
Cf2py intent(out) a
Cf2py depend(n) a
DO I=1,N
IF (I.EQ.1) THEN
A(I) = 0.0D0
ELSEIF (I.EQ.2) THEN
A(I) = 1.0D0
ELSE
A(I) = A(I-1) + A(I-2)
ENDIF
ENDDO
END
C END FILE FIB3.F
Building the extension module can be now carried out in one command:
f2py -c -m fib3 fib3.f
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