I'm generating a code coverage report in Xcode 7.3 using Slather
slather coverage --show --scheme SchemaName --workspace WorkspaceName.xcworkspace ProjectName.xcodeproj
The problem is that, it generates the report for some of the Foundation class files as well. I want to generate report consisting only project files.

You need to ignore those explicitly. Add --ignore '../*' to ignore everything outside of the root folder, for example. This will catch all of those.
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