in the :constructors map and subsequent -init definitions, how do I represent a varargs constructor (assuming the superclass has multiple constructors of which one is varargs) ?
Since varargs are essentially syntax sugar for Object arrays, you could just use "[Ljava.lang.Object;" as the type of constructor's parameter.
Here's some sample code:
(ns t.vtest
  (:gen-class
   :implements   [clojure.lang.IDeref]
   :init init
   :state state
   :constructors {["[Ljava.lang.Object;"] []}))
   ;;                                      ^-----------------------
   ;; You should put "[Ljava.lang.Object;" for superclass varargs constructor here
   ;; I left it blank for the sake of working example 
(defn -init
  [args]
  (println "first element of args" (aget args 0) "total elements" (alength args))
  [[] (into [] args)])
(defn -deref
  [this]
  (.state this))
and that's how it looks in REPL
user=> @(t.vtest. (into-array Object ["A" "B" 1 2]))
first element of args A total elements 4
["A" "B" 1 2]
                        Since clojure don't support it at the moment you need to patch it with: https://groups.google.com/forum/#!topic/clojure/HMpMavh0WxA.
And use it with new meta tag:
(ns t.vtest 
  (:gen-class 
   :implements   [clojure.lang.IDeref]
   :init init
   :state state
   :constructors {^:varargs ["[Ljava.lang.Object;"] []} 
  ))
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