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Center error bars (geom_errorbar) horizontally on bars (geom_bar)

Tags:

r

ggplot2

How would I position the error bars in the centre of the appropriately coloured bars?

df1 <- data.frame(
  supp = c("OJ","OJ","OJ","VC","VC","VC"),
  dose = c(0.5,1,2,0.5,1,2),
  len = c(13.23,22.7,26.06,7.98,16.77,26.14),
  se = c(1.41,1.27,0.84,0.87,0.8,1.52)
)

df1$dose <- factor(df1$dose)
ggplot(df1, aes(x=dose, y=len, fill=supp)) +      
geom_bar(stat="identity", position=position_dodge()) +  
scale_fill_manual(name = "", values = c("deepskyblue1", "green")) +
geom_errorbar(data = df1[1:3,], aes(ymin=len-se, ymax=len+se), width=.4, colour=c("deepskyblue1"), position=position_dodge(.9)) +
geom_errorbar(data = df1[4:6,], aes(ymin=len-se, ymax=len+se), width=.4, colour=c("green"), position=position_dodge(.9))
like image 348
jmu Avatar asked Dec 12 '22 16:12

jmu


1 Answers

As data for error bars are located in the same data frame where data for the bars you don't need to provide argument data= in geom_errorbar() and also there is no need to call geom_errorbar() twice.

You should provide in geom_errorbar() ymin and ymax values in aes(), also color=supp in aes() will ensure that error bars are colored according to supp values. To get the same colors as for bars, add scale_color_manual() with the same color names. With argument position=position_dodge(0.9) you can get errorbars in center of bars.

ggplot(df1, aes(x=dose, y=len, fill=supp)) +      
  geom_bar(stat="identity", position=position_dodge()) +  
  scale_fill_manual(name = "", values = c("deepskyblue1", "green")) +
  geom_errorbar(aes(ymin=len-se, ymax=len+se,color=supp), width=.4,
       position=position_dodge(.9))+
  scale_color_manual(name = "", values = c("deepskyblue1", "green"))

enter image description here

like image 80
Didzis Elferts Avatar answered Feb 06 '23 08:02

Didzis Elferts