I'm having trouble working with Python3's tempfile library in general.
I need to write a file in a temporary directory, and make sure it's there. The third party software tool I use sometimes fails so I can't just open the file, I need to verify it's there first using a 'while loop' or other method before just opening it. So I need to search the tmp_dir (using os.listdir() or equivalent).
Specific help/solution and general help would be appreciated in comments.
Thank you.
Small sample code:
import os
import tempfile
with tempfile.TemporaryDirectory() as tmp_dir:
print('tmp dir name', tmp_dir)
# write file to tmp dir
fout = open(tmp_dir + 'file.txt', 'w')
fout.write('test write')
fout.close()
print('file.txt location', tmp_dir + 'lala.fasta')
# working with the file is fine
fin = open(tmp_dir + 'file.txt', 'U')
for line in fin:
print(line)
# but I cannot find the file in the tmp dir like I normally use os.listdir()
for file in os.listdir(tmp_dir):
print('searching in directory')
print(file)
That's expected because the temporary directory name doesn't end with path separator (os.sep
, slash or backslash on many systems). So the file is created at the wrong level.
tmp_dir = D:\Users\foo\AppData\Local\Temp\tmpm_x5z4tx
tmp_dir + "file.txt"
=> D:\Users\foo\AppData\Local\Temp\tmpm_x5z4txfile.txt
Instead, join
both paths to get a file inside your temporary dir:
fout = open(os.path.join(tmp_dir,'file.txt'), 'w')
note that fin = open(tmp_dir + 'file.txt', 'U')
finds the file, that's expected, but it finds it in the same directory where tmp_dir
was created.
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