def fillblast(sequentie, titel_lijst, score_lijst, e_lijst, iden_lijst, pos_lijst, gaps_lijst):
conn = mysql.connector.connect(host = "ithurtswhenip.nl", user = "pg2", password = "pg2", database= "pg2", port= "3307")
cursor = conn.cursor()
Blast = 1000
for i in range(0,len(titel_lijst)):
Blast =+ 2
cursor.execute("INSERT INTO `pg2`.`Blast` (`Blast_id`, `Blast_seq`, `Blast_titel`, `Blast_score`, `Blast_E`, `Blast_gaps`, `Blast_pos`, `Blast_iden`) VALUES (%s, %s, %s, %s, %s, %s, %s, %s);", (Blast, sequentie[i] ,titel_lijst[i], score_lijst[i], e_lijst[i], iden_lijst[i], pos_lijst[i], gaps_lijst[i]))
print("1 record toegevoegd")
cursor.commit()
cursor.close()
conn.close()
I get the following error:
AttributeError: 'MySQLCursor' object has no attribute 'commit'
How does it come, and where does it go wrong? I try to connect with MySQLWorkbench.
EDIT:
Now I get the following error:
mysql.connector.errors.DatabaseError: 1205 (HY000): Lock wait timeout exceeded; try restarting transaction
commit() Method. This method sends a COMMIT statement to the MySQL server, committing the current transaction. Since by default Connector/Python does not autocommit, it is important to call this method after every transaction that modifies data for tables that use transactional storage engines.
“mycon” is connection object which stores connection established with MySQL. “connect()” function is used to connect with mysql by specifying parameters. like host, user, passwd, database.
Because you can not commit a cursor! you must commit the connection.
# cursor.commit() --> This is wrong!
conn.commit() # This is right
Check the docs...
While fixing some legacy code (that apparently hasn't been working for a couple of years, so users stopped trying to use it), we ran into the same error, using the MySQL-python package in Django. Using the suggestions on this and other answers however resulted in a different error, on account of it occurring within the Django ORM:
django.db.transaction.TransactionManagementError: This code isn't under transaction management
So for those who run into this error after using conn.commit() instead of cursor.commit(), you may be able to use enter_transaction_management
and leave_transaction_management
(note that this was for Django 1.4.6 and MySQL-python 1.2.5; I may have to update this once we get the Django upgrade completed):
try:
conn.enter_transaction_management()
cursor = conn.cursor()
cursor.execute(sql)
conn.commit()
except DatabaseError as e:
cursor.rollback()
log.warning('log warning here')
# Handle other exceptions here.
finally:
if cursor:
cursor.close()
conn.leave_transaction_management()
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