It should be possible to use the R packages future
and promises
to trigger asynchronous (long running) processing via Shiny apps without freezing the rest of the app while the async process is running in another R process.
See:
https://cran.r-project.org/web/packages/promises/vignettes/intro.html
https://cran.r-project.org/web/packages/promises/vignettes/overview.html
https://cran.r-project.org/web/packages/promises/vignettes/futures.html
https://cran.r-project.org/web/packages/promises/vignettes/shiny.html
I got this to work in R-script-based environment but can't get this to work when I implement a simple shiny app with 2 functions. The "not-async" function is always blocked while the async function is running, but that should not be the case.
I have posted the same question on the GitHub repo of the package promises
: https://github.com/rstudio/promises/issues/23
I am posting it here as well hoping someone can help.
The question is:
Mac OS 10.12
$ R --version
R version 3.4.3 (2017-11-30) -- "Kite-Eating Tree"
remove.packages("future")
remove.packages("promises")
remove.packages("shiny")
install.packages("future")
install.packages("devtools")
devtools::install_github("rstudio/promises")
devtools::install_github("rstudio/shiny")
> packageVersion("future")
[1] ‘1.8.1’
> packageVersion("promises")
[1] ‘1.0.1’
> packageVersion("shiny")
[1] ‘1.0.5.9000’
One side question on the shiny package version, https://rstudio.github.io/promises/articles/intro.html says it should be >=1.1, but even installing with devtools, the version remains 1.0.5... . Is this an issue or is there a typo in the doc?
First, you can use promises with Shiny outputs. If you’re using an async-compatible version of Shiny (version >=1.1), all of the built-in renderXXX functions can deal with either regular values or promises.
I have implemented this simple shiny app inspired from the example at the URLs mentioned above. The shiny app has 2 "sections":
read_csv_async
which sleeps for a few seconds, reads a csv file into a data frame. The df is then rendered below the button.The issue is that the second functionality (histogram plot update) is blocked while the async processing is occurring.
global.R
library("shiny")
library("promises")
library("dplyr")
library("future")
# path containing all files, including ui.R and server.R
setwd("/path/to/my/shiny/app/dir")
plan(multiprocess)
# A function to simulate a long running process
read_csv_async = function(sleep, path){
log_path = "./mylog.log"
pid = Sys.getpid()
write(x = paste(format(Sys.time(), "%Y-%m-%d %H:%M:%OS"), "pid:", pid, "Async process started"), file = log_path, append = TRUE)
Sys.sleep(sleep)
df = read.csv(path)
write(x = paste(format(Sys.time(), "%Y-%m-%d %H:%M:%OS"), "pid:", pid, "Async process work completed\n"), file = log_path, append = TRUE)
df
}
ui.R
fluidPage(
actionButton(inputId = "submit_and_retrieve", label = "Submit short async analysis"),
br(),
br(),
tableOutput("user_content"),
br(),
br(),
br(),
hr(),
sliderInput(inputId = "hist_slider_val",
label = "Histogram slider",
value = 25,
min = 1,
max = 100),
plotOutput("userHist")
)
server.R
function(input, output){
# When button is clicked
# load csv asynchronously and render table
data_promise = eventReactive(input$submit_and_retrieve, {
future({ read_csv_async(10, "./data.csv") })
})
output$user_content <- renderTable({
data_promise() %...>% head(5)
})
# Render a new histogram
# every time the slider is moved
output$userHist = renderPlot({
hist(rnorm(input$hist_slider_val))
})
}
data.csv
Column1,Column2
foo,2
bar,5
baz,0
Thanks!
By default, shiny runs with the option "window" inside R-Studio, which without R-Studio won't work.
Along with Shiny elements, you can use HTML elements to stylize your content in your application. In my opinion, R Shiny is very easy to learn despite how powerful the tool is. If you're working on a side project or looking to add something to your portfolio, I highly recommend trying it out.
On the other hand, R Shiny is an open-source package for building web applications with R. It provides a robust web framework for developing any sort of app, not only dashboards. Shiny is easy and intuitive to use, as you'll see in the examples below.
So this behavior is normal, see the response of the package developer at https://github.com/rstudio/promises/issues/23
Summary:
In shiny apps, one R process can be shared by multiple users.
If one user submits a long running task, then all the other users sharing the same underlying R process are blocked.
The goal of promises
is to avoid this. So promises
will prevent blocking between "user sessions" within one R process but not within a single "user session".
The author of the package mentioned that this feature is not supported yet and that it may be added if enough people ask for it. If you are looking for this, please go the GitHub issue and like the original question - this is how interest for new features is measured.
Thanks!
If you love us? You can donate to us via Paypal or buy me a coffee so we can maintain and grow! Thank you!
Donate Us With