Well I tried hashing a string or at least a set of numbers in Python and compare it with the one generated using the MD5 Library updated by Scott MacVicar on the Arduino but the results I get are differents.
Arduino Code:
#include <MD5.h> 
void setup()
{
   //initialize serial
   Serial.begin(9600);
   //give it a second
   delay(1000);
   //generate the MD5 hash for our string
   unsigned char* hash=MD5::make_hash("hello");
   //generate the digest (hex encoding) of our hash
   char *md5str = MD5::make_digest(hash, 16);
   //print it on our serial monitor
   Serial.println(md5str);
}
Result: 5d41402abc4b2a76b9e4080020008c00
Python Code:
from hashlib import md5
m = md5('hello').hexdigest()
print m    
Result: 5d41402abc4b2a76b9719d911017c592
From what I can see in every attempt is that the difference comes at the last 14 characters. But the length of the generated hashes are the same!
What am I doing wrong?? Thanks
Edit:
I used a command from the terminal and got:
echo -n 'hello' | openssl md5
Result: 5d41402abc4b2a76b9719d911017c592
Which makes me think that the root of the problem is in the arduino code
I'm going to assume that you are using the MD5 library from here: https://github.com/tzikis/ArduinoMD5/
It looks like that library has a bug.  The MD5::make_hash() function returns a pointer to memory on the stack.  Some of that memory must be being altered before the call to make_digest() so the resulting digest is partially wrong.
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