Can you help me annotate a ggplot2 scatterplot?
To a typical scatter plot (black):
df <- data.frame(x=seq(1:100), y=sort(rexp(100, 2), decreasing = T))
ggplot(df, aes(x=x, y=y)) + geom_point()
I want to add annotations in the form of an extra tick and a custom label (red):
Example image:
To adjust the number of minor ticks, you just change the number of minor breaks using the minor_breaks argument of the continuous scale functions. The vector you give the minor_breaks argument will define the position of each minor tick.
Four solutions.
The first uses scale_x_continuous
to add the additional element then uses theme
to customize the new text and tick mark (plus some additional tweaking).
The second uses annotate_custom
to create new grobs: a text grob, and a line grob. The locations of the grobs are in data coordinates. A consequence is that the positioning of the grob will change if the limits of y-axis changes. Hence, the y-axis is fixed in the example below. Also, annotation_custom
is attempting to plot outside the plot panel. By default, clipping of the plot panel is turned on. It needs to be turned off.
The third is a variation on the second (and draws on code from here). The default coordinate system for grobs is 'npc', so position the grobs vertically during the construction of the grobs. The positioning of the grobs using annotation_custom
uses data coordinates, so position the grobs horizontally in annotation_custom
. Thus, unlike the second solution, the positioning of the grobs in this solution is independent of the range of the y values.
The fourth uses viewports
. It sets up a more convenient unit system for locating the text and tick mark. In the x direction, the location uses data coordinates; in the y direction, the location uses "npc" coordinates. Thus, in this solution too, the positioning of the grobs is independent of the range of the y values.
First Solution
## scale_x_continuous then adjust colour for additional element
## in the x-axis text and ticks
library(ggplot2)
df <- data.frame(x=seq(1:100), y=sort(rexp(100, 2), decreasing = T))
p = ggplot(df, aes(x=x, y=y)) + geom_point() +
scale_x_continuous(breaks = c(0,25,30,50,75,100), labels = c("0","25","xyz","50","75","100")) +
theme(axis.text.x = element_text(color = c("black", "black", "red", "black", "black", "black")),
axis.ticks.x = element_line(color = c("black", "black", "red", "black", "black", "black"),
size = c(.5,.5,1,.5,.5,.5)))
# y-axis to match x-axis
p = p + theme(axis.text.y = element_text(color = "black"),
axis.ticks.y = element_line(color = "black"))
# Remove the extra grid line
p = p + theme(panel.grid.minor = element_blank(),
panel.grid.major.x = element_line(color = c("white", "white", NA, "white", "white", "white")))
p
Second Solution
## annotation_custom then turn off clipping
library(ggplot2)
library(grid)
df <- data.frame(x=seq(1:100), y=sort(rexp(100, 2), decreasing = T))
p = ggplot(df, aes(x=x, y=y)) + geom_point() +
scale_y_continuous(limits = c(0, 4)) +
annotation_custom(textGrob("xyz", gp = gpar(col = "red")),
xmin=30, xmax=30,ymin=-.4, ymax=-.4) +
annotation_custom(segmentsGrob(gp = gpar(col = "red", lwd = 2)),
xmin=30, xmax=30,ymin=-.25, ymax=-.15)
g = ggplotGrob(p)
g$layout$clip[g$layout$name=="panel"] <- "off"
grid.draw(g)
Third Solution
library(ggplot2)
library(grid)
df <- data.frame(x=seq(1:100), y=sort(rexp(100, 2), decreasing = T))
p = ggplot(df, aes(x=x, y=y)) + geom_point()
gtext = textGrob("xyz", y = -.05, gp = gpar(col = "red"))
gline = linesGrob(y = c(-.02, .02), gp = gpar(col = "red", lwd = 2))
p = p + annotation_custom(gtext, xmin=30, xmax=30, ymin=-Inf, ymax=Inf) +
annotation_custom(gline, xmin=30, xmax=30, ymin=-Inf, ymax=Inf)
g = ggplotGrob(p)
g$layout$clip[g$layout$name=="panel"] <- "off"
grid.draw(g)
Fourth Solution
Updated to ggplot2 v3.0.0
## Viewports
library(ggplot2)
library(grid)
df <- data.frame(x=seq(1:100), y=sort(rexp(100, 2), decreasing = T))
(p = ggplot(df, aes(x=x, y=y)) + geom_point())
# Search for the plot panel using regular expressions
Tree = as.character(current.vpTree())
pos = gregexpr("\\[panel.*?\\]", Tree)
match = unlist(regmatches(Tree, pos))
match = gsub("^\\[(panel.*?)\\]$", "\\1", match) # remove square brackets
downViewport(match)
#######
# Or find the plot panel yourself
# current.vpTree() # Find the plot panel
# downViewport("panel.6-4-6-4")
#####
# Get the limits of the ggplot's x-scale, including the expansion.
x.axis.limits = ggplot_build(p)$layout$panel_params[[1]][["x.range"]]
# Set up units in the plot panel so that the x-axis units are, in effect, "native",
# but y-axis units are, in effect, "npc".
pushViewport(dataViewport(yscale = c(0, 1), xscale = x.axis.limits, clip = "off"))
grid.text("xyz", x = 30, y = -.05, just = "center", gp = gpar(col = "red"), default.units = "native")
grid.lines(x = 30, y = c(.02, -.02), gp = gpar(col = "red", lwd = 2), default.units = "native")
upViewport(0)
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