I tried to run app from Android studio, and it worked. But after stopping and starting few times this message appears.
Uninstalling and installing over again works, but as soon I restart the program the same message reappears.
"Your app does not have the latest code changes because it was restarted manually. Please run from IDE instead."
I am running everything from IDE. Nothing it done through the phone itself.
For me even killing the app and running from Android Studio still appeared the same sentence "Your app does not have the latest.."
What always works is Run > Computer > Clean and Rerun 'app'
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