Prior to Android Studio 0.4, I was able to set a custom debug keystore via
File -> Project Structure -> Facets -> Compiler Tab
This option has gone at least with Android Studio 0.4.2. Where can I set the custom keystore for being able to share it over different PCs, e.g. via a VCS?
This can be solved by adding signingConfigs to the build.gradle configuration.
android {
    // ...
    signingConfigs {
        debug {
            storeFile file('../debug.keystore')
        }
        /*
        release {
            storeFile file('release.keystore')
            storePassword "mystorepassword"
            keyAlias "mykeyalias"
            keyPassword "mykeypassword"
        }
        */
    }
                        You can do the same using signingConfigs in build.gradle file and putting certificates in project directory
Step 1. Create a directory inside you module like
  --YourProject
    --your_module
      --KeystoreCertificates
        --myCertificates
        --other_certificates
build.gradle file inside your_module dir
    android {
        signingConfigs {
           myCustomDebug  {
              storeFile file("KeystoreCertificates/myCertificates")
              storePassword "certi_password"
              keyAlias "certi_alias"
              keyPassword "alias_password"      
           }
         }
        buildTypes {
            debug {
               runProguard false
               proguardFiles getDefaultProguardFile('proguard-android.txt'), 'proguard-rules.txt'
               signingConfig signingConfigs.myCustomDebug
        }
    }
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