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Alternative for python-mathdom

Tags:

python

mathml

I'd like to convert a MathML expression to an equation string in python, for which the MathDOM module should be good for.

An example would be:

<math xmlns="http://www.w3.org/1998/Math/MathML">
   <lambda>
     <bvar><ci>A</ci></bvar>
     <bvar><ci>B</ci></bvar>
     <apply>
         <plus/>
         <ci>A</ci>
         <ci>B</ci>
     </apply>
   </lambda>
</math>

should map to "A + B". This should obviously work with more complex expressions.

However, it is quite old and not working properly with new versions of the xml module (trying to include the wrong module structure, etc.)

Does anyone know useful alternatives?

like image 745
Michael Schubert Avatar asked May 31 '11 13:05

Michael Schubert


1 Answers

Best solution so far: libsbml

from libsbml import *
ast = readMathMLFromString(xmlString)
f = FunctionDefinition(2,4)
f.setMath(ast)
kl = KineticLaw(2,4)
kl.setMath(f.getBody())
kl.getFormula()

Ok for me since I'm already working with it but far from a general solution.

like image 181
Michael Schubert Avatar answered Oct 19 '22 06:10

Michael Schubert