well this problem is general in sql server ce
i have indexes on all the the fields.
also the same query but with ID IN ( list of int ids) is pretty fast.
i tried to change the query to OUTER Join but this just make it worse.
so any hints on why this happen and how to fix this problem?
That's because the index is not really helpful for that kind of query, so the database has to do a full table scan. If the query is (for some reason) slower than a simple "SELECT * FROM TABLE", do that instead and filter the unwanted IDs in the program.
EDIT: by your comment, I recognize you use a subquery instead of a list. Because of that, there are three possible ways to do the same (hopefully one of them is faster):
Original statement:
select * from mytable where id not in (select id from othertable);
Alternative 1:
select * from mytable where not exists
(select 1 from othertable where mytable.id=othertable.id);
Alternative 2:
select * from mytable
minus
select mytable.* from mytable in join othertable on mytable.id=othertable.id;
Alternative 3: (ugly and hard to understand, but if everything else fails...)
select * from mytable
left outer join othertable on (mytable.id=othertable.id)
where othertable.id is null;
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