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I am getting increasingly frustrated with this issue, but I have been trying to reinstall GDAL in order to install the new version of QGIS. When I try to install it using pip install GDAL I get the following:
Installing collected packages: GDAL
Running setup.py install for GDAL
building 'osgeo._gdal' extension
cc -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I../../port -I../../gcore -I../../alg -I../../ogr/ -I/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.9/include -c extensions/gdal_wrap.cpp -o build/temp.macosx-10.7-x86_64-2.7/extensions/gdal_wrap.o
extensions/gdal_wrap.cpp:2230:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
res = SWIG_AddCast(res);
~~~ ^ ~~~
extensions/gdal_wrap.cpp:2233:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
res = SWIG_AddCast(res);
~~~ ^ ~~~
extensions/gdal_wrap.cpp:3515:12: error: use of undeclared identifier 'GDALGetMetadataDomainList'
return GDALGetMetadataDomainList( self );
^
extensions/gdal_wrap.cpp:3753:5: error: unknown type name 'CPLVirtualMem'
CPLVirtualMem *vmem;
^
extensions/gdal_wrap.cpp:3761:5: error: unknown type name 'GDALTileOrganization'
GDALTileOrganization eTileOrganization;
^
extensions/gdal_wrap.cpp:3836:15: warning: unused variable 'start_addr' [-Wunused-variable]
char* start_addr = (char*)CPLVirtualMemGetAddr( self->vmem ) + start_offset;
^
extensions/gdal_wrap.cpp:4237:9: error: unknown type name 'CPLVirtualMem'
CPLVirtualMem* vmem = GDALDatasetGetVirtualMem( self,
^
extensions/gdal_wrap.cpp:4237:31: error: use of undeclared identifier 'GDALDatasetGetVirtualMem'
CPLVirtualMem* vmem = GDALDatasetGetVirtualMem( self,
^
extensions/gdal_wrap.cpp:4263:237: error: unknown type name 'GDALTileOrganization'
SWIGINTERN CPLVirtualMemShadow *GDALDatasetShadow_GetTiledVirtualMem(GDALDatasetShadow *self,GDALRWFlag eRWFlag,int nXOff,int nYOff,int nXSize,int nYSize,int nTileXSize,int nTileYSize,GDALDataType eBufType,int band_list,int *pband_list,GDALTileOrganization eTileOrganization,size_t nCacheSize,char **options=NULL){
^
extensions/gdal_wrap.cpp:4266:9: error: unknown type name 'CPLVirtualMem'
CPLVirtualMem* vmem = GDALDatasetGetTiledVirtualMem( self,
^
extensions/gdal_wrap.cpp:4620:9: error: unknown type name 'CPLVirtualMem'
CPLVirtualMem* vmem = GDALRasterBandGetVirtualMem( self,
^
extensions/gdal_wrap.cpp:4620:31: error: use of undeclared identifier 'GDALRasterBandGetVirtualMem'
CPLVirtualMem* vmem = GDALRasterBandGetVirtualMem( self,
^
extensions/gdal_wrap.cpp:4647:9: error: unknown type name 'CPLVirtualMem'
CPLVirtualMem* vmem = GDALGetVirtualMemAuto( self,
^
extensions/gdal_wrap.cpp:4647:31: error: use of undeclared identifier 'GDALGetVirtualMemAuto'
CPLVirtualMem* vmem = GDALGetVirtualMemAuto( self,
^
extensions/gdal_wrap.cpp:4667:9: error: unknown type name 'CPLVirtualMem'
CPLVirtualMem* vmem = GDALRasterBandGetTiledVirtualMem( self,
^
extensions/gdal_wrap.cpp:4667:31: error: use of undeclared identifier 'GDALRasterBandGetTiledVirtualMem'; did you mean 'GDALRasterBandShadow_GetVirtualMem'?
CPLVirtualMem* vmem = GDALRasterBandGetTiledVirtualMem( self,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GDALRasterBandShadow_GetVirtualMem
extensions/gdal_wrap.cpp:4619:33: note: 'GDALRasterBandShadow_GetVirtualMem' declared here
SWIGINTERN CPLVirtualMemShadow *GDALRasterBandShadow_GetVirtualMem(GDALRasterBandShadow *self,GDALRWFlag eRWFlag,int nXOff,int nYOff,int nXSize,int nYSize,int nBufXSize,int nBufYSize,GDALDataType eBufType,size_t nCacheSize,size_t nPageSizeHint,char **options=NULL){
^
extensions/gdal_wrap.cpp:4685:41: error: use of undeclared identifier 'GTO_BSQ'
vmemshadow->eTileOrganization = GTO_BSQ;
^
extensions/gdal_wrap.cpp:4867:16: error: use of undeclared identifier 'GDALRATChangesAreWrittenToFile'
return GDALRATChangesAreWrittenToFile( self );
^
extensions/gdal_wrap.cpp:7845:31: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
PyObject *item_list = PyMapping_Items( obj1 );
^
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/include/python2.7/abstract.h:1354:50: note: expanded from macro 'PyMapping_Items'
#define PyMapping_Items(O) PyObject_CallMethod(O,"items",NULL)
^
extensions/gdal_wrap.cpp:11385:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "B";
^
extensions/gdal_wrap.cpp:11390:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "h";
^
extensions/gdal_wrap.cpp:11395:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "H";
^
extensions/gdal_wrap.cpp:11400:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "i";
^
extensions/gdal_wrap.cpp:11405:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "I";
^
extensions/gdal_wrap.cpp:11410:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "f";
^
extensions/gdal_wrap.cpp:11415:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "F";
^
extensions/gdal_wrap.cpp:11420:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "B";
^
extensions/gdal_wrap.cpp:13656:3: error: unknown type name 'GDALTileOrganization'
GDALTileOrganization arg12 ;
^
extensions/gdal_wrap.cpp:13768:24: error: unknown type name 'GDALTileOrganization'
arg12 = static_cast< GDALTileOrganization >(val12);
^
extensions/gdal_wrap.cpp:23687:14: warning: explicitly assigning a variable of type 'void *' to itself [-Wself-assign]
clientdata = clientdata;
~~~~~~~~~~ ^ ~~~~~~~~~~
13 warnings and 17 errors generated.
error: command 'cc' failed with exit status 1
Complete output from command /usr/local/opt/python/bin/python2.7 -c "import setuptools;__file__='/private/var/folders/y2/thsw8bnj0xz0vp55gcykptfw0000gn/T/pip_build_root/GDAL/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/y2/thsw8bnj0xz0vp55gcykptfw0000gn/T/pip-bLqvAE-record/install-record.txt --single-version-externally-managed:
running install
running build
running build_py
creating build
creating build/lib.macosx-10.7-x86_64-2.7
copying gdal.py -> build/lib.macosx-10.7-x86_64-2.7
copying ogr.py -> build/lib.macosx-10.7-x86_64-2.7
copying osr.py -> build/lib.macosx-10.7-x86_64-2.7
copying gdalconst.py -> build/lib.macosx-10.7-x86_64-2.7
copying gdalnumeric.py -> build/lib.macosx-10.7-x86_64-2.7
creating build/lib.macosx-10.7-x86_64-2.7/osgeo
copying osgeo/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/osgeo
copying osgeo/gdal.py -> build/lib.macosx-10.7-x86_64-2.7/osgeo
copying osgeo/gdal_array.py -> build/lib.macosx-10.7-x86_64-2.7/osgeo
copying osgeo/gdalconst.py -> build/lib.macosx-10.7-x86_64-2.7/osgeo
copying osgeo/gdalnumeric.py -> build/lib.macosx-10.7-x86_64-2.7/osgeo
copying osgeo/ogr.py -> build/lib.macosx-10.7-x86_64-2.7/osgeo
copying osgeo/osr.py -> build/lib.macosx-10.7-x86_64-2.7/osgeo
running build_ext
building 'osgeo._gdal' extension
creating build/temp.macosx-10.7-x86_64-2.7
creating build/temp.macosx-10.7-x86_64-2.7/extensions
cc -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I../../port -I../../gcore -I../../alg -I../../ogr/ -I/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.9/include -c extensions/gdal_wrap.cpp -o build/temp.macosx-10.7-x86_64-2.7/extensions/gdal_wrap.o
extensions/gdal_wrap.cpp:2230:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
res = SWIG_AddCast(res);
~~~ ^ ~~~
extensions/gdal_wrap.cpp:2233:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
res = SWIG_AddCast(res);
~~~ ^ ~~~
extensions/gdal_wrap.cpp:3515:12: error: use of undeclared identifier 'GDALGetMetadataDomainList'
return GDALGetMetadataDomainList( self );
^
extensions/gdal_wrap.cpp:3753:5: error: unknown type name 'CPLVirtualMem'
CPLVirtualMem *vmem;
^
extensions/gdal_wrap.cpp:3761:5: error: unknown type name 'GDALTileOrganization'
GDALTileOrganization eTileOrganization;
^
extensions/gdal_wrap.cpp:3836:15: warning: unused variable 'start_addr' [-Wunused-variable]
char* start_addr = (char*)CPLVirtualMemGetAddr( self->vmem ) + start_offset;
^
extensions/gdal_wrap.cpp:4237:9: error: unknown type name 'CPLVirtualMem'
CPLVirtualMem* vmem = GDALDatasetGetVirtualMem( self,
^
extensions/gdal_wrap.cpp:4237:31: error: use of undeclared identifier 'GDALDatasetGetVirtualMem'
CPLVirtualMem* vmem = GDALDatasetGetVirtualMem( self,
^
extensions/gdal_wrap.cpp:4263:237: error: unknown type name 'GDALTileOrganization'
SWIGINTERN CPLVirtualMemShadow *GDALDatasetShadow_GetTiledVirtualMem(GDALDatasetShadow *self,GDALRWFlag eRWFlag,int nXOff,int nYOff,int nXSize,int nYSize,int nTileXSize,int nTileYSize,GDALDataType eBufType,int band_list,int *pband_list,GDALTileOrganization eTileOrganization,size_t nCacheSize,char **options=NULL){
^
extensions/gdal_wrap.cpp:4266:9: error: unknown type name 'CPLVirtualMem'
CPLVirtualMem* vmem = GDALDatasetGetTiledVirtualMem( self,
^
extensions/gdal_wrap.cpp:4620:9: error: unknown type name 'CPLVirtualMem'
CPLVirtualMem* vmem = GDALRasterBandGetVirtualMem( self,
^
extensions/gdal_wrap.cpp:4620:31: error: use of undeclared identifier 'GDALRasterBandGetVirtualMem'
CPLVirtualMem* vmem = GDALRasterBandGetVirtualMem( self,
^
extensions/gdal_wrap.cpp:4647:9: error: unknown type name 'CPLVirtualMem'
CPLVirtualMem* vmem = GDALGetVirtualMemAuto( self,
^
extensions/gdal_wrap.cpp:4647:31: error: use of undeclared identifier 'GDALGetVirtualMemAuto'
CPLVirtualMem* vmem = GDALGetVirtualMemAuto( self,
^
extensions/gdal_wrap.cpp:4667:9: error: unknown type name 'CPLVirtualMem'
CPLVirtualMem* vmem = GDALRasterBandGetTiledVirtualMem( self,
^
extensions/gdal_wrap.cpp:4667:31: error: use of undeclared identifier 'GDALRasterBandGetTiledVirtualMem'; did you mean 'GDALRasterBandShadow_GetVirtualMem'?
CPLVirtualMem* vmem = GDALRasterBandGetTiledVirtualMem( self,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GDALRasterBandShadow_GetVirtualMem
extensions/gdal_wrap.cpp:4619:33: note: 'GDALRasterBandShadow_GetVirtualMem' declared here
SWIGINTERN CPLVirtualMemShadow *GDALRasterBandShadow_GetVirtualMem(GDALRasterBandShadow *self,GDALRWFlag eRWFlag,int nXOff,int nYOff,int nXSize,int nYSize,int nBufXSize,int nBufYSize,GDALDataType eBufType,size_t nCacheSize,size_t nPageSizeHint,char **options=NULL){
^
extensions/gdal_wrap.cpp:4685:41: error: use of undeclared identifier 'GTO_BSQ'
vmemshadow->eTileOrganization = GTO_BSQ;
^
extensions/gdal_wrap.cpp:4867:16: error: use of undeclared identifier 'GDALRATChangesAreWrittenToFile'
return GDALRATChangesAreWrittenToFile( self );
^
extensions/gdal_wrap.cpp:7845:31: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
PyObject *item_list = PyMapping_Items( obj1 );
^
/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/include/python2.7/abstract.h:1354:50: note: expanded from macro 'PyMapping_Items'
#define PyMapping_Items(O) PyObject_CallMethod(O,"items",NULL)
^
extensions/gdal_wrap.cpp:11385:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "B";
^
extensions/gdal_wrap.cpp:11390:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "h";
^
extensions/gdal_wrap.cpp:11395:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "H";
^
extensions/gdal_wrap.cpp:11400:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "i";
^
extensions/gdal_wrap.cpp:11405:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "I";
^
extensions/gdal_wrap.cpp:11410:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "f";
^
extensions/gdal_wrap.cpp:11415:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "F";
^
extensions/gdal_wrap.cpp:11420:21: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings]
buf->format = "B";
^
extensions/gdal_wrap.cpp:13656:3: error: unknown type name 'GDALTileOrganization'
GDALTileOrganization arg12 ;
^
extensions/gdal_wrap.cpp:13768:24: error: unknown type name 'GDALTileOrganization'
arg12 = static_cast< GDALTileOrganization >(val12);
^
extensions/gdal_wrap.cpp:23687:14: warning: explicitly assigning a variable of type 'void *' to itself [-Wself-assign]
clientdata = clientdata;
~~~~~~~~~~ ^ ~~~~~~~~~~
13 warnings and 17 errors generated.
error: command 'cc' failed with exit status 1
The main point being the last line: error: command 'cc' failed with exit status. I have tried virtually every fix I found on Stackoverflow and everywhere else, from the export CFLAG strategy to deleting files. I still get that error.
Can anyone help please.
955
I've just run into this (hence finding your question). I solved it by making sure that the version of (Python's) GDAL I was trying to install matched that of the libgdal on the system.
In my case pip was pulling in GDAL==1.11.0, whereas the version of libgdal I had was 1.10.1+dfsg-5ubuntu1. Running pip install GDAL==1.10.0 (maybe with the actual version substituted) should do the right thing.
Your compiler error is GDAL 1.11.0 expecting symbols that are only there in the most recent version of libgdal.
187
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