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Expand dataframe by adding rows and values based on numbers in dataframe

I have event data on a population level, ie for each day there is a sum of individuals with events and individuals censored. I would like to expand this data to a more traditional format for survival analysis, ie each individual get a row. So for each day, a number of rows need to added for the number of events (with events = 1 and censor = 0) and for the number of censor (with events = 0 and censor = 1). Below is an example of an input data frame (dataIn) and of the desired output.

days <- c(1,2,3)
event <- c(2,2,0)
censor <- c(0,2,2)
dataIn <- data.frame(days, event, censor)

  days event censor
    1     2      0
    2     2      2
    3     0      2

  days event censor
    1     1      0
    1     1      0
    2     1      0
    2     1      0
    2     0      1
    2     0      1
    3     0      1
    3     0      1

like image 330
mikeHoncho Avatar asked Sep 04 '26 09:09

mikeHoncho


1 Answers

Here's a fairly pedestrian but effective way of doing it using rep:

with(dataIn, data.frame(day    = c(rep(days, event), rep(days, censor)), 
                        event  = rep(c(1, 0), c(sum(event), sum(censor))),
                        censor = rep(c(0, 1), c(sum(event), sum(censor)))))
#>   day event censor
#> 1   1     1      0
#> 2   1     1      0
#> 3   2     1      0
#> 4   2     1      0
#> 5   2     0      1
#> 6   2     0      1
#> 7   3     0      1
#> 8   3     0      1
like image 137
Allan Cameron Avatar answered Sep 06 '26 01:09

Allan Cameron



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