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When I submit a job using
qsub script.sh
is $@ setted to some value inside script.sh? That is, are there any command line arguments passed to script.sh?
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Arguments can be passed to the script when it is executed, by writing them as a space-delimited list following the script file name. Inside the script, the $1 variable references the first argument in the command line, $2 the second argument and so forth.
The qsub command is used to submit jobs to the queue. job, as previously mentioned, is a program or task that may be assigned to run on a cluster system. qsub command is itself simple, however, it to actually run your desired program may be a bit tricky. is because qsub, when used as designed, will only run scripts.
To invoke a function, simply use the function name as a command. To pass parameters to the function, add space separated arguments like other commands. The passed parameters can be accessed inside the function using the standard positional variables i.e. $0, $1, $2, $3 etc.
You can pass command-line arguments containing blanks by enclosing them in quotes. For example, try ./simple 'foo bar' baz . Notice that $1 expands to foo bar this time, and not just to foo .
You can pass arguments to the job script using the -F option of qsub:
qsub script.sh -F "args to script"
or inside script.sh:
#PBS -F arguments
This is documented here.
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