I'm having trouble working with Python3's tempfile library in general.
I need to write a file in a temporary directory, and make sure it's there. The third party software tool I use sometimes fails so I can't just open the file, I need to verify it's there first using a 'while loop' or other method before just opening it. So I need to search the tmp_dir (using os.listdir() or equivalent).
Specific help/solution and general help would be appreciated in comments.
Thank you.
Small sample code:
import os
import tempfile
with tempfile.TemporaryDirectory() as tmp_dir:
print('tmp dir name', tmp_dir)
# write file to tmp dir
fout = open(tmp_dir + 'file.txt', 'w')
fout.write('test write')
fout.close()
print('file.txt location', tmp_dir + 'lala.fasta')
# working with the file is fine
fin = open(tmp_dir + 'file.txt', 'U')
for line in fin:
print(line)
# but I cannot find the file in the tmp dir like I normally use os.listdir()
for file in os.listdir(tmp_dir):
print('searching in directory')
print(file)
That's expected because the temporary directory name doesn't end with path separator (os.sep, slash or backslash on many systems). So the file is created at the wrong level.
tmp_dir = D:\Users\foo\AppData\Local\Temp\tmpm_x5z4tx
tmp_dir + "file.txt"
=> D:\Users\foo\AppData\Local\Temp\tmpm_x5z4txfile.txt
Instead, join both paths to get a file inside your temporary dir:
fout = open(os.path.join(tmp_dir,'file.txt'), 'w')
note that fin = open(tmp_dir + 'file.txt', 'U') finds the file, that's expected, but it finds it in the same directory where tmp_dir was created.
If you love us? You can donate to us via Paypal or buy me a coffee so we can maintain and grow! Thank you!
Donate Us With