I am making a plot where the pvalues are plotted as text using geom_text. The pvalues are given in the file pvaluesmir21combined
.
I want to add a red colour to my text (FDR) if the value is < 5e-02. Any idea how this can be done?
ggplot(TumorNormalmiR21_5p.m3, aes(X2,value)) +
geom_dotplot(aes(fill=variable),binaxis = "y") + coord_flip() +
theme_bw(base_size=8) +
theme(axis.text.y=element_text(hjust = 0)) +
geom_text(aes(x, y, label=FDR, group=NULL),data=pvaluesmir21combined,size=2)
> pvaluesmir21combined
FDR x y
1 p = 8.3e-02 1 13
2 p = 6.3e-05 2 13
3 p = 3.2e-17 3 13
4 p = 4.8e-22 4 13
5 p = 3.1e-10 5 13
6 p = 6.7e-11 6 13
7 p = 3.2e-24 7 13
8 p = 2.1e-06 8 13
9 p = 1.9e-02 9 13
10 p = 9.4e-06 10 13
11 p = 1.5e-03 11 13
You can try with the function scale_color_manual
ggplot(TumorNormalmiR21_5p.m3, aes(X2,value)) +
geom_dotplot(aes(fill=variable),binaxis = "y") + coord_flip() +
theme_bw(base_size=8) +
theme(axis.text.y=element_text(hjust = 0)) +
geom_text(aes(x, y, label=FDR, group=NULL, color = ifelse(as.numeric(sub("p = ", "", FDR)) < 5e-02, 0, 1),data=pvaluesmir21combined,size=2) +
scale_color_manual(values = c("red", "black"))
See this link http://docs.ggplot2.org/0.9.3.1/scale_manual.html
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